Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g293 ATGGGTTGCATAAAGGAGAAGAGGGAAAGGAGTGAAGTCGGTGGAGTTAATCATCCAGGCATGGGTAGGGTTCCAAAGGCAAGTGAGGGAGAACAGGTGGCGGCGGGCTGGCCATCTTGGCTTGCTGCGGTGGCCGGTGAAGCCATCAAAGGTTGGATACCACGGCGTGCAGATACTTTTGAGAAGTTGGATAAAATTGGCCAAGGTACTTATAGCAATGTCTACAAGGGTCGTGATGTCACTCGTGGAAAAATTGTTGCTTTGAAGAAAGTAAGGTTTGACCATCTAGATCCCGAGAGTGTCAAATTTATGGCAAGGGAAATTCTTGTTTTGCGCCGGCTTGATCATCCAAATATAATAAAACTGGAAGGCTTGGTCACTTCAAGGAAGTCTTTCAGCCTGTACCTTGTTTTCGAGTATATGGAACATGATCTTACAGGACTTGCAGCGCTTCCAGGCTGCAAGTTCACAGAACCACAGATCAAATGCTACATGCAGCAACTACTCAGTGGTCTTGATCATTGTCATAGTCATGGTGTTCTGCATCGCGACATAAAGGGTTCAAATCTTCTAATTGACAATAATGGCATCCTGAAGATTGCAGATTTTGGCTTAGCTAGTTTTTTTGATCCTCATCGTAGTTTGTCAATGACGAGCCGTGTTGTGACTCTTTGGTATCGTCCGCCAGAACTTTTACTCGGAGCCACCCACTATGGAGTTTCTGTGGATTTATGGAGCGCAGGCTGCATACTTGGAGAATTATATGCTGGCAAGCCTATTATGCCCGGAAGGACAGAGGTTGAGCAATTGCACAGGATTTTTAAGCTTTGTGGCTCACCATCTGAGGATTTCTGGAGAAAATCAAAATTACCTCATTCAGCAGTGTTCAAACCTCAACAACCTTATAGATGTTGTGTTGCAGAAACATTTAAAGATTTTCCTGCTGCTACTGTAGGGCTTATGGAGACTTTACTTTCCATAGATCCTGCACATCGAGGAACTGCAGCTGCTGCTCTCAAGAGTGAGTTCTTCACAACAAAACCGCTTGCTTGTGATCCTTCAAGTTTGCCCAAGTATCCTCCCAGCAAAGAGATTGATGCAAAATTGCGGGAAGAAGAAGTTAGAAGGCAAGGAGCAGGAGGTGGCAGGGGCCAGAGGGTTGATCCAGAGAGGAGAGGATCCAAAGAATCTCGGGCAATTGCAGCACCAAATGCTAATGCTGAGTTAGCCATGTCGATGCAGAAGAGACAAGGCCAGGCTAATTCGAAGAGCCGAAGTGAGATGTTCTACCGTAATCAGGAGGAAGCTGCTTCTGGCTTTCCAATTGATCCACCTAGACAATCACAAGGTGTAAAAGAAGTGAGCAAAAATCTATTCGAGCATCATTCTGCTAGAGTTTCACATTCAGGGCCATTGGTTCGTGCTGCTGGATGGTCAAAGGCTGGAAAGAAACATGATGATCTTCCCATGACTTCAACTAGAGCTGACTTAGCAACATTATCTGGTCTAGTAGCAACTAGAACTTCATCTGAAGATCGCCGGGAAAAACCTGGTCCTTCAAAGCTAGAACCAAGAAACCAAATGAGCAGGTTTCCAGGATCAATGAATGAATCAGGAAAGCATGATCGGAAGCATCATAATAAGTTCAGTGAAGACTCTTATCTGACAGAAGATGGAAAAGGGAGTACTAAAGAACCGATTCTGCAAAGCAACCGATCCAATACAAACAAGATGTACTTCTCTGGTCCTTTACTCGTTACATCAAACAACGTGGATCAGATGCTGAAAGATCATGATCGTAAGGTCCAAGAACTTGATCGACGAGCTCGATTTGAGAAGATGAAAGTAGGGAAATATCAGTCTCAAGGGAAGCAGCAAGCAAGAGGCAATCCCCCAAAATATGTCCCCAGCAACGGTGTCCGACAAATGGGCTGTTACTATTTGAATTCTACAACATATGGGAGGAGGCTGTTGAGAACACATGGTGTAAATATATATGATTCTACAATTTGCCTTCTCCTGTTGTATTTTAGTAGGGGGATTATTTGTCAAAATAAGGTCATTATCCAAAATGAATGGAATCATTTCATTTCTATATGGTTTTTCCAAAGCTGCATTTGTATTTATAGGAACAAATGTAATCATATATGTGTTCCACCTCCAATTATGACCAAAGCCTTGTTCAGTTTGAATTCTTATACGTTACTCAATCTTCAATCTTCTATCTGTTGCAGTGAATCAGACCTTCTTCATCTTCAACCTCCCTTTTCATCCATGTTTTCCCAGTTTCTCTCTCTCTTCCTCTCCTCTTTCTTCTTCCTCAATTCACCTTCAGTATCAGTATCAGCTACTGAGTTCATCTTCAACAGCTTCAACTCCACCAGCCTCTTGCTCTATGGCAACGCCACCATCCAAAATTCTCTTCTCTTTCTCACAAACGAGACCACCTTTTCCATCGGACGTGCTCTTTACCCTTCTAAAGTCCCCACAAGATCACCTAACTCAACCCACCTCCTTCCCTTCTCTTCCTCCTTCATTTTCTCCATTCCTCCCTACAAAAATCGCCTCCCTGGCCATGGGTTTGCCTTCTTATTTGCGCCCACCGCCGGCATGGATGGTGTAAGTTCATCTCAGCATCTCGGACTGTTTAATTTCACCAATGATGGAAAGTCGACTAACCATGTTTTTGCTGTTGAGTTTGATGTGTTTGAGAATCAAGAATTCAATGATATCGATGATAATCATGTAGGGGTGGATGTGAACTCATTGACATCTCTTACGTCCCATGAAGCAGGGTATTGGAGTGGGGAGGATGATGATGATGAGAACTTCGAAGAACTGGAGCTCAATAATGGCGAGAATTATCAAGTATGGATTGAGTATATGGATTCGCGAATAAATGTTACCATGGAGCGTGCAGGCAGGAAGAGGCCTGATCAGCCATTGATCAGCGCAGTTGTTAATCTTTCTGATGTTCTTCTAGATGAAATGTATGTGGGGTTTTGTGGAGCCACTGGACAGTTGGTTGAGGGTCATATCATTCTGTCATGGAGCTTCAGTCAATCGAATTTTTCGATCGGTGATGCTTTGGAAACCATGAATTTGGCTTCTTTTGTTCTTCCAAGGGGGTCTGTTTTTAGATCCAAAGGGTTTGCTTTAGGGGTTAGCCTTGGTTCTGCAGTTCTTCTTGTGGGGTTGGGGGTTATGTTGTATGTTGCTTTGGTCCGGAGGAGGAAGAAAAGGGCCATAGGGGAGGAAATCCAGGAATGGGAACTGGAGTACTGGCCTCACCGAATTGGTTACAGCGAAATTTACACTGCAACAGATGGTTTCTCAGAGAAAAACGTCATCGGGTTCAGCAGTAACGGCAAGGTCTATAAAGGGGTTCTGGTGGGAGGACCAGAAGTTGCAGTGAAGTCCATTCCTCATGAAAATGAGCATGGAATGAAAGCATTCCTGGCGGAGGTTTCCAGCCTAGGCAGGTTGAAGCATAGGAACTTAGTGGGGTTAAGAGGCTGGTGCAAGAAGGAGAAAGGAGACCTGATTTTGGTATATGATTATATGGAAAATGGGAGTTTGGAGAAGAGGATCTTCCACCAGTATCCTGAAAGTATGATGTTGAGCTGGGAAGAGAGGGCTCGAGTTCTGAAGGATGTTGGTCATGGGATCTTGTATTTGCATGAGGGCTGGGAAGCCACGGTCTTACACAGAGACATAAAGGCAAGCAATGTGTTGCTTGACAAGGATATGAATGCCAGACTAGGCGATTTCGGGTTAGCCCGGATGCATCATCATGGGGACTTGGCTAACACAACTCGGGTGGTTGGCACACTAGGATACATGGCTCCTGAAGTGATTAGAACCGGGCGAGCCACCGTCCAAACCGATGTGTTTGGCTTTGGGGTCCTGGTTCTAGAGGTGGTGTGTGGGAGGGAGCCTATCCAGCACAACAAGCCAGGCTTGGTTGATTGGGTATGGAGGTTGATGGAAAGAGGGGAGTTGGTTTTGGCTTTGGATGAGCGGCTTAAGGCTAGGGGAGAATACAGGGAGGAGGAAGTGGAGAGGGTCCTTCAGATTGGGTTGTTGTGTGCCCATCCGGACCCTCGCCGGAGACTGATGATGAGGCAAGTGGTCAAGGCTTTGGAGGGGAGAAGCGAGGGGTCTGAGCCTGAAGAGGGAATGGATGTGAGTTTGCTTCATTCTGCAGAGTGGTCTAAGCGTAATAGCTACTCTGACGGAGGAGGGCACCCTACATTTGATGAAATTCAAAAGAGTCTTCTTTGTTCCACATCTCTATCAGTGTCTGATATCATACTGGAGGGTCGGTGA 4329 45.3 MGCIKEKRERSEVGGVNHPGMGRVPKASEGEQVAAGWPSWLAAVAGEAIKGWIPRRADTFEKLDKIGQGTYSNVYKGRDVTRGKIVALKKVRFDHLDPESVKFMAREILVLRRLDHPNIIKLEGLVTSRKSFSLYLVFEYMEHDLTGLAALPGCKFTEPQIKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHRSLSMTSRVVTLWYRPPELLLGATHYGVSVDLWSAGCILGELYAGKPIMPGRTEVEQLHRIFKLCGSPSEDFWRKSKLPHSAVFKPQQPYRCCVAETFKDFPAATVGLMETLLSIDPAHRGTAAAALKSEFFTTKPLACDPSSLPKYPPSKEIDAKLREEEVRRQGAGGGRGQRVDPERRGSKESRAIAAPNANAELAMSMQKRQGQANSKSRSEMFYRNQEEAASGFPIDPPRQSQGVKEVSKNLFEHHSARVSHSGPLVRAAGWSKAGKKHDDLPMTSTRADLATLSGLVATRTSSEDRREKPGPSKLEPRNQMSRFPGSMNESGKHDRKHHNKFSEDSYLTEDGKGSTKEPILQSNRSNTNKMYFSGPLLVTSNNVDQMLKDHDRKVQELDRRARFEKMKVGKYQSQGKQQARGNPPKYVPSNGVRQMGCYYLNSTTYGRRLLRTHGVNIYDSTICLLLLYFSRGIICQNKVIIQNEWNHFISIWFFQSCICIYRNKCNHICVPPPIMTKALFSLNSYTLLNLQSSICCSESDLLHLQPPFSSMFSQFLSLFLSSFFFLNSPSVSVSATEFIFNSFNSTSLLLYGNATIQNSLLFLTNETTFSIGRALYPSKVPTRSPNSTHLLPFSSSFIFSIPPYKNRLPGHGFAFLFAPTAGMDGVSSSQHLGLFNFTNDGKSTNHVFAVEFDVFENQEFNDIDDNHVGVDVNSLTSLTSHEAGYWSGEDDDDENFEELELNNGENYQVWIEYMDSRINVTMERAGRKRPDQPLISAVVNLSDVLLDEMYVGFCGATGQLVEGHIILSWSFSQSNFSIGDALETMNLASFVLPRGSVFRSKGFALGVSLGSAVLLVGLGVMLYVALVRRRKKRAIGEEIQEWELEYWPHRIGYSEIYTATDGFSEKNVIGFSSNGKVYKGVLVGGPEVAVKSIPHENEHGMKAFLAEVSSLGRLKHRNLVGLRGWCKKEKGDLILVYDYMENGSLEKRIFHQYPESMMLSWEERARVLKDVGHGILYLHEGWEATVLHRDIKASNVLLDKDMNARLGDFGLARMHHHGDLANTTRVVGTLGYMAPEVIRTGRATVQTDVFGFGVLVLEVVCGREPIQHNKPGLVDWVWRLMERGELVLALDERLKARGEYREEEVERVLQIGLLCAHPDPRRRLMMRQVVKALEGRSEGSEPEEGMDVSLLHSAEWSKRNSYSDGGGHPTFDEIQKSLLCSTSLSVSDIILEGR* 1443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4410440 4425457 - Vvi12g293 Vvi12g293 772816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g293 1442 Pfam Protein kinase domain 60 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g293 1442 Pfam Protein kinase domain 1112 1379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g293 1442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1234 1246 IPR008271 GO:0004672|GO:0006468
Vvi12g293 1442 ProSiteProfiles Protein kinase domain profile. 1111 1419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g293 1442 MobiDBLite consensus disorder prediction 536 559 - -
Vvi12g293 1442 Gene3D - 782 1034 - -
Vvi12g293 1442 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.2-RELATED 781 1435 - -
Vvi12g293 1442 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.2-RELATED 57 265 - -
Vvi12g293 1442 SUPERFAMILY Protein kinase-like (PK-like) 54 350 IPR011009 -
Vvi12g293 1442 CDD lectin_legume_LecRK_Arcelin_ConA 784 1022 IPR001220 GO:0030246
Vvi12g293 1442 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Vvi12g293 1442 CDD STKc_CDK9_like 60 344 - -
Vvi12g293 1442 Gene3D Transferase(Phosphotransferase) domain 1 143 381 - -
Vvi12g293 1442 Gene3D Phosphorylase Kinase; domain 1 47 142 - -
Vvi12g293 1442 SUPERFAMILY Concanavalin A-like lectins/glucanases 782 1024 IPR013320 -
Vvi12g293 1442 Coils Coil 595 615 - -
Vvi12g293 1442 MobiDBLite consensus disorder prediction 374 399 - -
Vvi12g293 1442 MobiDBLite consensus disorder prediction 615 634 - -
Vvi12g293 1442 SUPERFAMILY Protein kinase-like (PK-like) 1089 1382 IPR011009 -
Vvi12g293 1442 Pfam Legume lectin domain 784 1023 IPR001220 GO:0030246
Vvi12g293 1442 MobiDBLite consensus disorder prediction 1 28 - -
Vvi12g293 1442 MobiDBLite consensus disorder prediction 374 397 - -
Vvi12g293 1442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Vvi12g293 1442 Gene3D Transferase(Phosphotransferase) domain 1 1188 1398 - -
Vvi12g293 1442 SMART serkin_6 60 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g293 1442 SMART serkin_6 1111 1381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g293 1442 PANTHER - 781 1435 - -
Vvi12g293 1442 PANTHER - 57 265 - -
Vvi12g293 1442 MobiDBLite consensus disorder prediction 503 574 - -
Vvi12g293 1442 ProSiteProfiles Protein kinase domain profile. 60 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g293 1442 Gene3D Phosphorylase Kinase; domain 1 1073 1187 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g293 Vvi19g220 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76112 PF00069 Pkinase 2.90E-66 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g293 - - vvi:100259120 1315.44