Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g299 ATGGACAAGCCTTTGCTCGACGGAGAAAGCAGCGGCGGCCGCCGGAGAGGCCAGACACCGGTGTTCCATCGGAGGTCCGATGCCATCGCCTATGGCTCGCCCTACCAGAAGGCCGCCGCCCTTGTCGATCTGGCTGAGGATGGTATTGGTCTACCAGAGCAAATGCTTGATCAGGAAAGCTTTGAAAGTGCAGCAAAGTTCTACTTCATTTTTATTCGGTTCAATTTTCTCTGGTCCCTCAATCTTTTCGCCTTGATAGTTCTAAATTTCCTTGAGAAACCCTTGTGGTGTGCCAAACAAACAACATACTCTTGCAATGACAGGGAGTACTACTTTCTTGGGCAGTTGCCGTACTTAACTAGTGTCGAGTCTCTTATCTATGAGGGCATAACACTCGTAATAATTTTGTTACATACGTTCTTTCCAATATCATATGAAGGATCCCAGATATACTGGAAAAACCCTCTTAATAGATTGAAGGTCATTTTGCTGTCCATATTGGTTGCTGATTTGTTGGTTTATGTTCTTTACTTGTCACCACTTCCCTTCTATTATCTTCCTTTTAGGCTTGCACCATATATACGGGTCATTCTTTGCATTCTAAATATCAGGGAAGTACGAGCAACTATGGTTATTCTAGCTGGAATGCTTGGCACATACCTAAACATCATGGCTCTAGGACTATTGTTTCTTCTGTTCGCAAGTTGGGTAGCATATGTCATGTTTGAAGATACCCAACAGGGAAAGACAGTGTTTACTTCATACCTAACTACATTGTATCAAATGTTTATTTTATTCACCACATCCAATAACCCAGATGTATGGATTCCAGCATACAAGGTTTCACGTTGGTATTGCCTGTTTTTTGTTTTATACATGCTATTGGGAGTTTACTTCATGACCAACTTGATCCTTGCTGTTATATACGACAGCTTCAAAAATCAGCTTGCAAAACAAGTTGCTGAAATGGACCGAATGAGAAGAAGAATATTGGAGAAAGCCTTTAATCTCATAGATAAATCTAATCTTGGATTTCTGAAAAAAGAGCAATGTATTCACCTATTTGAAGAATTGAATAAATACAGGTCTTTGCCGAAAATATCAAGAGAAGATTTTGAGTTAATATTTGATGAGCTGGATGATAGTAATGATTTCAAGATTAATTTGGATGAGTTTTTTGACCTTTGCAATGCCATCACTCTCAGTTTCCAGAAGGAGGATTCTCAATCTTGGTTTGAAAGATATCCATCATTTTATCATTCACCAGCATGTGAAAAGTTGAAAGCTTTTGTTCGAAGCTCCATATTTGGAAACATGATAGCTGTCATCCTTGTACTGAATCTAGTTGCTGTTATTATTGAAACAACGCTTGATATAGAGAACAATTCTGCTCAGAAGGTTTGGCAGAAGGTAGAGTTTGTCCTTGGGTGGATATATGTCCTGGAAATGGCTCTAAAAGTTTTTGCATTTGGATTTAAGAACTATTGGAGGGATGATTCAAATCGCTTTGATTTCTTTATAACATGGATAATAGTGATCGGAGAAACTGCAACTTTTGTGGCTCCCAGCAGCCTGAGTTTTCTTTCAAATGGGGAATGGATCCGGTACCTTCTTCTTGCAAGAATGTTGCGATTAATAAGACTCTTGATGCGCGTCAAACAGTACCGAGCCTTTATTGCCACATTCTTAAACCTCATACCAAGTTTGATGCCGTACCTCGGGACCATATTTTGTGTCCTCTGTATATATTGCTCTCTTGGCGTACAGATCTTCGGTGGGATTGTGAACAATGGGAACTCCAATTTGGAAGGAACTGATCTTGAGGAGTCTGACTATCTACTTTTCAATTTTAATGACTACCCAAATGGGATGGTGACACTTTTCAATCTGTTAGTCATGAACAACTGGCAAGTGTGGATGCAGAGCTACAAGGATTTGACAGGAACATCGTGGACTCTCGTATACTTTATCAGCTATTACCTATTAACAGTATTACTGCTTTTGAATTTGGTTGTAGCATTTGTTTTGGAGGCTTTCTTTGCTGAAATGGACCTTGAGAAGTCAGAAAATTGTGGAGAAGACGGCAAGGAAGCAGGAGAAAAGCAGCGCAGATATACCCGTTCAAGAATACGGAGTCAGAGAGTGGATATCCTTCTCCACCACATGTTGAGTGCAGAGCTGAATCAAACGGAGTCCTGA 2199 40.25 MDKPLLDGESSGGRRRGQTPVFHRRSDAIAYGSPYQKAAALVDLAEDGIGLPEQMLDQESFESAAKFYFIFIRFNFLWSLNLFALIVLNFLEKPLWCAKQTTYSCNDREYYFLGQLPYLTSVESLIYEGITLVIILLHTFFPISYEGSQIYWKNPLNRLKVILLSILVADLLVYVLYLSPLPFYYLPFRLAPYIRVILCILNIREVRATMVILAGMLGTYLNIMALGLLFLLFASWVAYVMFEDTQQGKTVFTSYLTTLYQMFILFTTSNNPDVWIPAYKVSRWYCLFFVLYMLLGVYFMTNLILAVIYDSFKNQLAKQVAEMDRMRRRILEKAFNLIDKSNLGFLKKEQCIHLFEELNKYRSLPKISREDFELIFDELDDSNDFKINLDEFFDLCNAITLSFQKEDSQSWFERYPSFYHSPACEKLKAFVRSSIFGNMIAVILVLNLVAVIIETTLDIENNSAQKVWQKVEFVLGWIYVLEMALKVFAFGFKNYWRDDSNRFDFFITWIIVIGETATFVAPSSLSFLSNGEWIRYLLLARMLRLIRLLMRVKQYRAFIATFLNLIPSLMPYLGTIFCVLCIYCSLGVQIFGGIVNNGNSNLEGTDLEESDYLLFNFNDYPNGMVTLFNLLVMNNWQVWMQSYKDLTGTSWTLVYFISYYLLTVLLLLNLVVAFVLEAFFAEMDLEKSENCGEDGKEAGEKQRRYTRSRIRSQRVDILLHHMLSAELNQTES* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4470301 4593022 - Vvi12g299 Vvi12g299 772822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g299 732 Coils Coil 729 732 - -
Vvi12g299 732 Pfam Ion transport protein 434 679 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi12g299 732 Pfam Ion transport protein 131 315 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi12g299 732 SUPERFAMILY EF-hand 309 399 IPR011992 -
Vvi12g299 732 Gene3D - 558 718 - -
Vvi12g299 732 SUPERFAMILY Voltage-gated potassium channels 434 679 - -
Vvi12g299 732 Gene3D - 205 313 - -
Vvi12g299 732 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509
Vvi12g299 732 Coils Coil 309 329 - -
Vvi12g299 732 PANTHER TWO PORE CALCIUM CHANNEL PROTEIN 1 1 731 IPR044581 GO:0005245
Vvi12g299 732 Gene3D - 425 557 IPR027359 -
Vvi12g299 732 Gene3D - 314 416 - -
Vvi12g299 732 SUPERFAMILY Voltage-gated potassium channels 116 313 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g299 K16900 - vvi:100233073 1231.08