Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g395 ATGGACTGGACCAGAGGCCACACCTTAGGCTCTGGCTCCTCTGCCACAGTCTCCCTCGCCAATTCTCTCCGGTCTGGCGACGTGTTTGCTGTCAAGTCGGTGGAGCTATCTCGGTCGGAGTCACTGCAGAGGGAGGAGAGAATCCTATCTTCTTTGAGGTCTCCTTATATAGTTGGCTACAAGGGGTGTGACATTACCAGGGAGAACAAGAAGCTTATGTACAATCTTTTCATTGAGTACATGCCCGGTGGCACTCTTGGTGATGCAATTCGGAGGGGTGGAGGTCAGCTTCATGAATCGATGATTGGGATTTATGCGCGACAAATTGTACAGGGATTGGATTACATTCACTCACGAGGCTTAGTGCATTGTGATATTAAAGGCCAGAACGTGCTAATTGGAGAAGATGGTGCAAAAATTGCTGATTTTGGGTGTGCCAAGTGGACTAACGGCAAGGATGACAGGAAGGTGCCGATTGCCGGAACACCGTTCTTCATGGCACCGGAGGTAGCGCGCGGCGAAGATCAGGGATACCCTTCTGATGTATGGGCTCTTGGATGTACAATAATTGAAATGGCCACTGGGGGCGCTCCATGGCCTAATGTGGCAAACGCAGTTGCAGCTCTTTATCGAATCGGATTCTCTGAAGAGCTGCCATGGATTCCAAGTTTTCTCTCCGACCAAGCAAAGGATTTTCTAAGCAAGTGCTTACGGAGAGATCCAAAAGAGAGGTGGACAGCAAGTCAGCTTCTCAAGCATCCATTTGTGGGAGAATTGAATCCTCAGGCAAAGCAAGTTCAAGAATCCTATTCAGATTCTCCAACAAGTATTCTAGACCAAAACTTTTGGAGCTCATTGGAGGAATCAGAAGCACAAGGCTACTTGAAGCAGGCAAGTTTTTCAAATTCTCCAGCAGAAAGGATCCGGAAACTATGGACGTTTTCAAGGGTAGAAAACTGGACAAGGGATGATAATTGGGTCACAATCAGAGGCAGTACCAATGAGGAAAGCAACGTACCCGCTGATTACATGGAAGATGAAGCGAGTCCAGTTTCCAGGTCGGAGGCAGTTTCGAGTAGTCATGATGTGGAAAAGGTAGAAAGCCATGGTGATGGAGAGGAGATGGAGGATTTCTTAGATAGCAAATTTAGTTGTAGGACATGTATGAAAGATAGTGTTGTAGTGAGCAACTTCAATTTTGAGATAGACAAAGAACACTTGTTAATTACTTCAACTTCAATCTCAAACTTCTTAGCATCCTAA 1263 46.32 MDWTRGHTLGSGSSATVSLANSLRSGDVFAVKSVELSRSESLQREERILSSLRSPYIVGYKGCDITRENKKLMYNLFIEYMPGGTLGDAIRRGGGQLHESMIGIYARQIVQGLDYIHSRGLVHCDIKGQNVLIGEDGAKIADFGCAKWTNGKDDRKVPIAGTPFFMAPEVARGEDQGYPSDVWALGCTIIEMATGGAPWPNVANAVAALYRIGFSEELPWIPSFLSDQAKDFLSKCLRRDPKERWTASQLLKHPFVGELNPQAKQVQESYSDSPTSILDQNFWSSLEESEAQGYLKQASFSNSPAERIRKLWTFSRVENWTRDDNWVTIRGSTNEESNVPADYMEDEASPVSRSEAVSSSHDVEKVESHGDGEEMEDFLDSKFSCRTCMKDSVVVSNFNFEIDKEHLLITSTSISNFLAS* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5671493 5672756 - Vvi12g395 Vvi12g395 772918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g395 420 PANTHER MAP KINASE KINASE KINASE 1 354 - -
Vvi12g395 420 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Vvi12g395 420 CDD STKc_MAPKKK 2 256 - -
Vvi12g395 420 Gene3D Transferase(Phosphotransferase) domain 1 2 325 - -
Vvi12g395 420 MobiDBLite consensus disorder prediction 358 373 - -
Vvi12g395 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vvi12g395 420 MobiDBLite consensus disorder prediction 331 373 - -
Vvi12g395 420 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g395 420 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 354 - -
Vvi12g395 420 Pfam Protein kinase domain 4 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g395 420 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g395 420 SUPERFAMILY Protein kinase-like (PK-like) 2 288 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g56 Vvi12g395 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76114 PF00069 Pkinase 1.10E-56 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g395 K20716 - vvi:100248217 814.298