Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi12g396 | ATGGCCAAAGGCAGTGGACTCTCCTTTGGGTCAGATCCAATCTTCTTCCTTCACAAACCAATAGTTATAAATTCATTTCCGGAGGATCACAGCAAGAGGTTTGCGGCCATGGATGCCACTAAAAACCAGTCCACTACCACTATTCAATTCCCAGTCAACCTCAACTGTGCTCACCCAGATTCTCCGGTTCCCGACGACGAAAAGCCCAGAATTGTCGATGAGATGGACTTTTTTGCTGATAAAAACCGCGACTCCAAGCCACCCACTACAGATAACAAGAACTCTCCCTATTATTTCAATGTAAACACTGGCTTGCACCTTCTTACTGCTAATACCAGCAGCGATCAGTCCATGGTGGATGATGGGATGTCGCCCCCGAACGTGGATGACAAGCGAGTTAAGAATGAGCTGGTGGTTCTTCAAGCTGAGATCGAGCGGATGCACGCAGAGAATGAGCGATTGAGGAGCATGCTGAACCAGGTTACTAACAACTACAACGCACTCCAGGTGCATATGGTGGCACTGATGCAAGATCAGAAGGCGGAGAACAATGAAGAACATGATCAGAAGCATAGTGGTAATAATAACGGAGGAGTTGTGGTGCCTAGACAGTTTATTGATCTTGGCCTTGCTGCTAAAGCTGAAGTCGAAGAGCCTTCGCTGTCTTCATCAGAAGGAAGGAGCGGTGACCGATCCGGATCACCCATAAACAACGGAGAAGTGGGTTCGAAGGAGTTGGAGCTGAGGAAGAATGAGAAGAAGGAATACAGCAGTGGAATTGGAAGAGAAGAAAGCCCAGATCAAGGATCCCAATGGGGAGCTAACAAGGTTCCCAGGTTGAATCCCTCCAAAAATGTTGATCAAACCGAAGCAACCATGAGGAAAGCCCGTGTCTCAGTTCGAGCACGATCTGAAGCACCTATGATCACTGATGGATGCCAATGGAGGAAGTATGGGCAGAAGATGGCAAAGGGAAATCCATGCCCTCGAGCTTATTATCGATGCACCATGGCTGCAGGTTGTCCGGTCCGCAAACAAGTGCAAAGATGCGCGGAGGATCGGAGTATTCTCATCACCACATATGAAGGTAATCACAACCACCCACTGCCGCCTGCTGCCATGGCAATGGCGTCGACCACTTCGTCTGCAGCGCGAATGCTACTGTCCGGGTCAATGCCCACCCCATTCCCTACTAACCTCGCCGGGCCGGCCGCTGCAACACCCTCTTCACTGCTGCCTCAAATCTTCAATCAAGCCCTTTACAATCAGTCAAATGCAGCAACTGCTGCCATTACAGCTGACCCCAACTTCACTGCAGCACTAGCGGCTGCCATCACCTCCATTATTGGTGGTGCTCAACCTCAACCAAACAGTAGTACTAACAATAACGCCAACACCACAGTCCCCACCACCAGCAACAGTGGCAACATTACTACTAGCAACAGCAATAGTAATGGCAGCAACAAACTCTGCAATTCAAAATTTCCAGGGAACTGA | 1497 | 49.37 | MAKGSGLSFGSDPIFFLHKPIVINSFPEDHSKRFAAMDATKNQSTTTIQFPVNLNCAHPDSPVPDDEKPRIVDEMDFFADKNRDSKPPTTDNKNSPYYFNVNTGLHLLTANTSSDQSMVDDGMSPPNVDDKRVKNELVVLQAEIERMHAENERLRSMLNQVTNNYNALQVHMVALMQDQKAENNEEHDQKHSGNNNGGVVVPRQFIDLGLAAKAEVEEPSLSSSEGRSGDRSGSPINNGEVGSKELELRKNEKKEYSSGIGREESPDQGSQWGANKVPRLNPSKNVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMPTPFPTNLAGPAAATPSSLLPQIFNQALYNQSNAATAAITADPNFTAALAAAITSIIGGAQPQPNSSTNNNANTTVPTTSNSGNITTSNSNSNGSNKLCNSKFPGN* | 499 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5678706 | 5681171 | - | Vvi12g396 | Vvi12g396 | 772919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi12g396 | 498 | MobiDBLite | consensus disorder prediction | 453 | 498 | - | - | |
Vvi12g396 | 498 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 395 | 475 | IPR044810 | GO:0003700 | |
Vvi12g396 | 498 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 44 | 393 | IPR044810 | GO:0003700 | |
Vvi12g396 | 498 | MobiDBLite | consensus disorder prediction | 215 | 296 | - | - | |
Vvi12g396 | 498 | MobiDBLite | consensus disorder prediction | 221 | 239 | - | - | |
Vvi12g396 | 498 | Gene3D | WRKY domain | 294 | 371 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi12g396 | 498 | PANTHER | OS05G0567200 PROTEIN | 395 | 475 | - | - | |
Vvi12g396 | 498 | PANTHER | OS05G0567200 PROTEIN | 44 | 393 | - | - | |
Vvi12g396 | 498 | Pfam | WRKY DNA -binding domain | 311 | 368 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi12g396 | 498 | ProSiteProfiles | WRKY domain profile. | 304 | 370 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi12g396 | 498 | MobiDBLite | consensus disorder prediction | 263 | 289 | - | - | |
Vvi12g396 | 498 | SUPERFAMILY | WRKY DNA-binding domain | 302 | 370 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi12g396 | 498 | Coils | Coil | 130 | 171 | - | - | |
Vvi12g396 | 498 | SMART | WRKY_cls | 309 | 369 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Vvi12g396 | 498 | MobiDBLite | consensus disorder prediction | 243 | 261 | - | - | |
Vvi12g396 | 498 | MobiDBLite | consensus disorder prediction | 181 | 200 | - | - |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
13802 | PF03106 | WRKY | 1.60E-24 | CL0274 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi12g396 | - | - | vvi:100243099 | 858.981 |