Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g396 ATGGCCAAAGGCAGTGGACTCTCCTTTGGGTCAGATCCAATCTTCTTCCTTCACAAACCAATAGTTATAAATTCATTTCCGGAGGATCACAGCAAGAGGTTTGCGGCCATGGATGCCACTAAAAACCAGTCCACTACCACTATTCAATTCCCAGTCAACCTCAACTGTGCTCACCCAGATTCTCCGGTTCCCGACGACGAAAAGCCCAGAATTGTCGATGAGATGGACTTTTTTGCTGATAAAAACCGCGACTCCAAGCCACCCACTACAGATAACAAGAACTCTCCCTATTATTTCAATGTAAACACTGGCTTGCACCTTCTTACTGCTAATACCAGCAGCGATCAGTCCATGGTGGATGATGGGATGTCGCCCCCGAACGTGGATGACAAGCGAGTTAAGAATGAGCTGGTGGTTCTTCAAGCTGAGATCGAGCGGATGCACGCAGAGAATGAGCGATTGAGGAGCATGCTGAACCAGGTTACTAACAACTACAACGCACTCCAGGTGCATATGGTGGCACTGATGCAAGATCAGAAGGCGGAGAACAATGAAGAACATGATCAGAAGCATAGTGGTAATAATAACGGAGGAGTTGTGGTGCCTAGACAGTTTATTGATCTTGGCCTTGCTGCTAAAGCTGAAGTCGAAGAGCCTTCGCTGTCTTCATCAGAAGGAAGGAGCGGTGACCGATCCGGATCACCCATAAACAACGGAGAAGTGGGTTCGAAGGAGTTGGAGCTGAGGAAGAATGAGAAGAAGGAATACAGCAGTGGAATTGGAAGAGAAGAAAGCCCAGATCAAGGATCCCAATGGGGAGCTAACAAGGTTCCCAGGTTGAATCCCTCCAAAAATGTTGATCAAACCGAAGCAACCATGAGGAAAGCCCGTGTCTCAGTTCGAGCACGATCTGAAGCACCTATGATCACTGATGGATGCCAATGGAGGAAGTATGGGCAGAAGATGGCAAAGGGAAATCCATGCCCTCGAGCTTATTATCGATGCACCATGGCTGCAGGTTGTCCGGTCCGCAAACAAGTGCAAAGATGCGCGGAGGATCGGAGTATTCTCATCACCACATATGAAGGTAATCACAACCACCCACTGCCGCCTGCTGCCATGGCAATGGCGTCGACCACTTCGTCTGCAGCGCGAATGCTACTGTCCGGGTCAATGCCCACCCCATTCCCTACTAACCTCGCCGGGCCGGCCGCTGCAACACCCTCTTCACTGCTGCCTCAAATCTTCAATCAAGCCCTTTACAATCAGTCAAATGCAGCAACTGCTGCCATTACAGCTGACCCCAACTTCACTGCAGCACTAGCGGCTGCCATCACCTCCATTATTGGTGGTGCTCAACCTCAACCAAACAGTAGTACTAACAATAACGCCAACACCACAGTCCCCACCACCAGCAACAGTGGCAACATTACTACTAGCAACAGCAATAGTAATGGCAGCAACAAACTCTGCAATTCAAAATTTCCAGGGAACTGA 1497 49.37 MAKGSGLSFGSDPIFFLHKPIVINSFPEDHSKRFAAMDATKNQSTTTIQFPVNLNCAHPDSPVPDDEKPRIVDEMDFFADKNRDSKPPTTDNKNSPYYFNVNTGLHLLTANTSSDQSMVDDGMSPPNVDDKRVKNELVVLQAEIERMHAENERLRSMLNQVTNNYNALQVHMVALMQDQKAENNEEHDQKHSGNNNGGVVVPRQFIDLGLAAKAEVEEPSLSSSEGRSGDRSGSPINNGEVGSKELELRKNEKKEYSSGIGREESPDQGSQWGANKVPRLNPSKNVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMPTPFPTNLAGPAAATPSSLLPQIFNQALYNQSNAATAAITADPNFTAALAAAITSIIGGAQPQPNSSTNNNANTTVPTTSNSGNITTSNSNSNGSNKLCNSKFPGN* 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5678706 5681171 - Vvi12g396 Vvi12g396 772919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g396 498 MobiDBLite consensus disorder prediction 453 498 - -
Vvi12g396 498 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 395 475 IPR044810 GO:0003700
Vvi12g396 498 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 44 393 IPR044810 GO:0003700
Vvi12g396 498 MobiDBLite consensus disorder prediction 215 296 - -
Vvi12g396 498 MobiDBLite consensus disorder prediction 221 239 - -
Vvi12g396 498 Gene3D WRKY domain 294 371 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g396 498 PANTHER OS05G0567200 PROTEIN 395 475 - -
Vvi12g396 498 PANTHER OS05G0567200 PROTEIN 44 393 - -
Vvi12g396 498 Pfam WRKY DNA -binding domain 311 368 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g396 498 ProSiteProfiles WRKY domain profile. 304 370 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g396 498 MobiDBLite consensus disorder prediction 263 289 - -
Vvi12g396 498 SUPERFAMILY WRKY DNA-binding domain 302 370 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g396 498 Coils Coil 130 171 - -
Vvi12g396 498 SMART WRKY_cls 309 369 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g396 498 MobiDBLite consensus disorder prediction 243 261 - -
Vvi12g396 498 MobiDBLite consensus disorder prediction 181 200 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g54 Vvi12g396 ECH
Vvi12g396 Vvi19g540 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13802 PF03106 WRKY 1.60E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g396 - - vvi:100243099 858.981