Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g41 ATGGATGAGGCCCTTCTCTCCAGAACAGCAGCTGGTGAGGAGTCAAGCAGACCATCTCCCAGGAGAGAGTTTACCTCTAGCCTTCTTGACCTAGGTTCACCTTGGCGACAATCAACTGCCCGTATTATCACCACCGATGCTGTTATCCCTATCATCACAACACCCAATTCTTCCTTTGCTAACCTCATTTCAAACTTAAACAGGAAGAGAAATCTCACCCACCGCTCACACTCTGCTCCTTCTGTGTTTACTGACGTCAAGGAGGCTTTTCCCACTTCTGCAGACCCGAGACCTTCCCGAAAATCAATGCCTCTAATCGTCAGGCAAGAGGCAGTTATGATGAGCACTGTAGATCTTAACCAATTCAACACAATGGTGCGGACATATATGATAGACACAGAAAAGGGAAGAATGAGGATAAGAATCAAAGTGGGTTTGGCATTGGCTGTTGTGGTTGTTTGCATTGCTGTGGGGACAATTGGAATACATCTTTTGGAGGGTCTGACTTGGGTTGATAGCATTTACCTATCGGTAACATCAGTGACAACCGTAGGATATGGGGATTATGCTTTTGAAACATTGGCGGGCAGGTGCTTTGCAATAATTTGGCTATTGGTAAGCACATTGGCTGTCGCTAGGGCATTTCTCTACCTCACTGAGCTGAGGATTGACAAGAGGAATCGAAGGATTGCGAAATGGGTTCTTCAGAAGAAGCTGACTCTTGGAGATTTAGTGGCTGCAGACCTTGATAATGATGGATCAATCAGCAAATCTGAGTTTGTTATATACAAACTAAAGGAGATGGGAAAGATATCAGAGAAAGACATCCTGCTGATTAGCAAACAGTTTGAGTCACTAGACCACACCAATTGTGGCAAAATTACTATTGCTGATCTCATGGATACTATTCAATTTTTACATTATTTTATCATTTTCAAATTTGCAACAGGTCCATCCATCTAG 963 43.41 MDEALLSRTAAGEESSRPSPRREFTSSLLDLGSPWRQSTARIITTDAVIPIITTPNSSFANLISNLNRKRNLTHRSHSAPSVFTDVKEAFPTSADPRPSRKSMPLIVRQEAVMMSTVDLNQFNTMVRTYMIDTEKGRMRIRIKVGLALAVVVVCIAVGTIGIHLLEGLTWVDSIYLSVTSVTTVGYGDYAFETLAGRCFAIIWLLVSTLAVARAFLYLTELRIDKRNRRIAKWVLQKKLTLGDLVAADLDNDGSISKSEFVIYKLKEMGKISEKDILLISKQFESLDHTNCGKITIADLMDTIQFLHYFIIFKFATGPSI* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 793724 798123 + Vvi12g41 Vvi12g41 772564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g41 320 Pfam Ion channel 150 218 IPR013099 -
Vvi12g41 320 PRINTS Two pore domain K+ channel signature 179 207 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g41 320 PRINTS Two pore domain K+ channel signature 237 246 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g41 320 Gene3D - 57 241 - -
Vvi12g41 320 MobiDBLite consensus disorder prediction 1 26 - -
Vvi12g41 320 SUPERFAMILY EF-hand 246 306 IPR011992 -
Vvi12g41 320 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 108 299 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g41 320 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 52 109 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vvi12g41 320 PANTHER OS01G0696100 PROTEIN 52 109 - -
Vvi12g41 320 PANTHER OS01G0696100 PROTEIN 108 299 - -
Vvi12g41 320 SUPERFAMILY Voltage-gated potassium channels 130 238 - -
Vvi12g41 320 ProSitePatterns EF-hand calcium-binding domain. 248 260 IPR018247 -
Vvi12g41 320 Gene3D - 244 311 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g356 Vvi12g41 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g41 K05389 - vvi:100262479 367.466