Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g419 ATGAAACAGAAGGTGGGTTTAGGGTTTTTTGTACTGCTCTCCGTTTTCTGTGCAGTTGATTCGCAGTGCAGTCGCGGCTGTGATCTTGCTCTGGGCTCATACTATGTCTGGCAAGGTTCCAACCTCACTTTTATCTCTCAGCTATTCCAGACAACGATTTCTGAAATTCTCAGCTACAACTCACAAATCGCTAATCAAGATAGTGTTGAAGCCGATACCAGAATCCGCGTGCCTTACTCCTCATGTGATTGCATCAATGGAGAATTTCTGGGCAAAGTGTTCAACTACACGGTGCAGTCCGGTGATACGTACGATCTTGTTGCGGAGACATACTATTCAAATCTGACCACTTCGGCGTGGTTGCAGAACTTCAATAGCTATGCCGCCAATCAAATTCCTGATACGGATGCTTATCTGAATGTGACTTTAAATTGTTCTTGTGGCAATAGCACCGTTTCCAAGGATTATGGGTTGTTCTTGTCCTACCCGCTTCGCCCAGAGGATAATTTGACTTCGGTTGCAGAGTCAGAGGGTTTGAATGCTTCCTTGTTGCAGAGTTACAATCCGGATTCCAATTTTAGTGCTGGGAGTGGGCTTGTTTACATTCCTACTAAAGATACCAGTGGAAGCTATCGGGCCCTGAAATCCAGCACAGGTGATTTCCTCTTTTCTGCATACTGGTTCGCAGGATTAGCAGGTGGTGTGATTGCTGGCATATCTATAGCAGCAGTAGTAGGAGTGCTGTTATTGACAGTTTGTATATATATTGGATTTTACAGAAAGAGGAAGGTGAAGGAAGCAGCATTGCTTCCAACTGAAGAACATTCTCTTCAACCTGGGCATGGTCCTGGAATTGCTTCAGATAAAGCTGTAGAATCAACAGGTCCTGCTTTTGGTTCTTCTGCAGGTCTTACAGGCATTACTGTGGACAAATCAGTGGAGTTCTCATATGAAGAACTTGCTAAGGCTTCTGATAATTTTAATTTGGCTAATAAGATCGGTCAAGGTGGCTTTGGATCTGTTTACTATGCAGAGCTGAGGGGCGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAGAGAATTTCTTGCTGAATTAAAAGTTTTGACACATGTGCATCACCTAAATTTGGTGCGCTTGATTGGATATTGTGTTGAGGGTTCTCTTTTTCTAGTCTATGAATACATTGAGAATGGCAACTTAAGCCAACATTTGCGTGGCTCAGGAAGGGACCCATTGCAATGGTCTAGTAGGGTTCAAATTGCCCTTGATTCAGCAAGAGGTCTTGAATATATTCATGAGCATACTGTTCCTGTGTATATCCATCGTGATATTAAGTCAGCAAATATACTGATAGATAAGAATTTCCATGGAAAGGTTGCAGATTTTGGTCTAACAAAATTGACTGAAGTTGGGAGTTCATCCCTACCCACACGTCTTGTGGGTACATTTGGATACATGCCACCAGAATACGCTCAATATGGTGACGTCTCTCCCAAAGTAGATGTATATGCTTTTGGGGTTGTCCTTTATGAACTTATTTCTGCCAAGGAGGCTGTGGTCAAGGACAATGGTTCTGTTGCTGAATCAAAGGGCCTTGTGGCTTTGTTCGAGGATGTGCTAAATAAGCCAGATCCACGAGAGGACCTTCGCAAACTAGTTGACCCTAGGCTTGAAGATAACTACCCACTCGACTCTGTGCGCAAGATGGCCCAACTTGCCAAAGCATGCACCCAGGAAAATCCTCAGCTAAGACCAAGCATGAGAACCATCGTGGTTGCCCTAATGACTCTTTCATCCTCAACAGAGGACTGGGATGTTGGTTCCTTCTACGACAACCAAGCCCTCGTCAATCTAATGTCTGGAAGGTAG 1878 43.98 MKQKVGLGFFVLLSVFCAVDSQCSRGCDLALGSYYVWQGSNLTFISQLFQTTISEILSYNSQIANQDSVEADTRIRVPYSSCDCINGEFLGKVFNYTVQSGDTYDLVAETYYSNLTTSAWLQNFNSYAANQIPDTDAYLNVTLNCSCGNSTVSKDYGLFLSYPLRPEDNLTSVAESEGLNASLLQSYNPDSNFSAGSGLVYIPTKDTSGSYRALKSSTGDFLFSAYWFAGLAGGVIAGISIAAVVGVLLLTVCIYIGFYRKRKVKEAALLPTEEHSLQPGHGPGIASDKAVESTGPAFGSSAGLTGITVDKSVEFSYEELAKASDNFNLANKIGQGGFGSVYYAELRGEKAAIKKMDMQASREFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDPLQWSSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGSSSLPTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAVVKDNGSVAESKGLVALFEDVLNKPDPREDLRKLVDPRLEDNYPLDSVRKMAQLAKACTQENPQLRPSMRTIVVALMTLSSSTEDWDVGSFYDNQALVNLMSGR* 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6048340 6054656 - Vvi12g419 Vvi12g419 772942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g419 625 CDD STKc_IRAK 333 594 - -
Vvi12g419 625 ProSitePatterns Protein kinases ATP-binding region signature. 333 355 IPR017441 GO:0005524
Vvi12g419 625 Gene3D LysM domain 23 85 IPR036779 -
Vvi12g419 625 SUPERFAMILY Protein kinase-like (PK-like) 309 597 IPR011009 -
Vvi12g419 625 SMART LysM_2 33 78 IPR018392 -
Vvi12g419 625 Gene3D Phosphorylase Kinase; domain 1 312 397 - -
Vvi12g419 625 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-LIKE 4 625 - -
Vvi12g419 625 Pfam LysM domain 34 78 IPR018392 -
Vvi12g419 625 ProSiteProfiles Protein kinase domain profile. 327 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g419 625 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 4 625 IPR044812 GO:0019199|GO:0045087
Vvi12g419 625 Pfam Protein tyrosine and serine/threonine kinase 328 596 IPR001245 GO:0004672|GO:0006468
Vvi12g419 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Vvi12g419 625 Gene3D Transferase(Phosphotransferase) domain 1 398 616 - -
Vvi12g419 625 SMART serkin_6 327 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g419 625 ProSiteProfiles LysM domain profile. 32 77 IPR018392 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g42 Vvi12g419 ECH
Vvi10g44 Vvi12g419 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76115 PF07714 PK_Tyr_Ser-Thr 4.20E-47 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g419 - K13429 vvi:100255092 1196.8