Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g425 ATGGCTCATCCCCACTACCCTCGCCTCTTGGCTGCCTATGTTAATTGCCAAAAGGTGGGGGCACCGCCGGAAGTGGTAGCCAGGTTAGAAGAGGCTTGTGCTTCTGAGGAAGCCATGGGTAGGTCTGCAACAAGCTGCGTAGGAGAAGACCCTGCACTGGATCAGTTCATGGAGGCATATTGTGAGATGCTCACCAAGTACGAGCAGGAGCTCACAAAACCCTTCAAAGAAGCCATGCTTTTCCTATCAAGGATCGAGTGCCAGTTCAAAGCCCTAACTGTTGCCCCTTCAGATTCTGTTTGTGGTAGTTATGCGGGTCGGGTTGGATCATCTGAGGAGGAGGTTGATGGGAATGACACTTGCATCGACCCTCAAGCCGAAGACAGGGAGCTGAAGGGCCAGCTTCTGCGCAAGTACAGTGGATATCTGGGTAGCCTGAAGCAGGAGTTCCTGAAGAAGAAAAAGAAAGGGAAACTACCCAAGGAAGCCAGGCAGCAGTTGCTTGACTGGTGGAGCAGACACTACAAGTGGCCTTACCCATCGGAGTCCCAAAAACTGGCACTTGCAGAATCGACTGGTCTAGATCAGAAACAGATAAACAACTGGTTCATCAATCAGAGGAAACGCCACTGGAAACCTTCAGAGGATATGCAGTTTGTGGTGATGGACGCAACCCATCCCCACTACTACATGGACAGCGTTATGGGCAATCCGTTCCCCATGGACTGCACGCCTACGCTTCTATGA 747 51.54 MAHPHYPRLLAAYVNCQKVGAPPEVVARLEEACASEEAMGRSATSCVGEDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFLSRIECQFKALTVAPSDSVCGSYAGRVGSSEEEVDGNDTCIDPQAEDRELKGQLLRKYSGYLGSLKQEFLKKKKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHPHYYMDSVMGNPFPMDCTPTLL* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6115198 6119855 - Vvi12g425 Vvi12g425 772948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g425 248 CDD homeodomain 162 214 IPR001356 GO:0003677
Vvi12g425 248 ProSiteProfiles ELK domain profile. 130 150 IPR005539 GO:0003677
Vvi12g425 248 Pfam Homeobox KN domain 170 209 IPR008422 GO:0003677|GO:0006355
Vvi12g425 248 Pfam KNOX1 domain 1 35 IPR005540 GO:0003677|GO:0005634
Vvi12g425 248 ProSiteProfiles 'Homeobox' domain profile. 150 213 IPR001356 GO:0003677
Vvi12g425 248 SMART ELK_2 130 151 IPR005539 GO:0003677
Vvi12g425 248 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 237 - -
Vvi12g425 248 SMART KNOX2_2 43 94 IPR005541 GO:0003677|GO:0005634
Vvi12g425 248 SMART HOX_1 152 217 IPR001356 GO:0003677
Vvi12g425 248 SUPERFAMILY Homeodomain-like 152 227 IPR009057 -
Vvi12g425 248 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Vvi12g425 248 SMART KNOX1_2 1 38 IPR005540 GO:0003677|GO:0005634
Vvi12g425 248 Pfam ELK domain 130 151 IPR005539 GO:0003677
Vvi12g425 248 Gene3D - 155 217 - -
Vvi12g425 248 Pfam KNOX2 domain 46 93 IPR005541 GO:0003677|GO:0005634
Vvi12g425 248 PANTHER - 1 237 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13805 PF03791 KNOX2 7.60E-22 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g425 - - vvi:100248152 501.901