Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g44 ATGTCTGATGAGAATAGGAGTACTCCTTACCACCACGATCCTTTCTGTCATGACCAAAATAGGGTTAGTGGGGCTGGCTTCCCATTCTTTTGTGAGAAGCCGGCCATCTTCAATCAAGGAGTGACTCCTTCACCGCAAGGCCTACACGCTACTGATCCCTCCTACATGACCTTCACTGACTACTTACATGGCTCTCTCGACTACAACACCCTTTCAAAGGCCTTTGACATGTCTTGCTCTTCATCCGAAGTCATCTCTCCAGTCGACAATGATTCGGGAAAGGGTACAGCCAGTCATGAACATCCCTCCACGCCTAATTCCTTGGACACTTCTTCTTCCACTGAGGCCATCACTGAAGATTCCGGGAAGAGTAAGCATAAGCCTGATCTGCAGGGAGGAGGGTGTGAAGATGGAGATGAAAATTCTAAGAAAGCGAATAAATCGAAGAAGAAAGGAGAGAAACGGCCAAAGGAACCACGGTTTGCTTTCATGACTAAGAGCGAGATCGATCATCTTGAGGATGGATACAGATGGAGAAAATACGGACAGAAGGCAGTCAAGAATAGCCCTTACCCAAGAAGTTATTACAGATGCACCACTCAGAAATGCACTGTGAAGAAACGAGTTGAAAGATCATTTCAAGATCCCTCCATTGTGATCACTACATATGAAGGACAGCACAACCATCCATGTCCGGCTACGATAAGAGGCAATGCTGCTGCAATGTTGCCAACTTCATTTTTCTCATCTGCTACAGTGGGATCTAGCTTCCCTCAGGAGTTTCTGACTCAGATGCTTCCCCCAAATAATCAAAGCGGTCCGAACTCTATGTACTATCACAACATTACTCCCCACCACCAGCAGCAGTTCCAACTTCCTGACTACGGATTATTGCAAGATATAGTTCCCTCTTTCATCCGCAAGCAGGAGCCATGA 936 46.47 MSDENRSTPYHHDPFCHDQNRVSGAGFPFFCEKPAIFNQGVTPSPQGLHATDPSYMTFTDYLHGSLDYNTLSKAFDMSCSSSEVISPVDNDSGKGTASHEHPSTPNSLDTSSSTEAITEDSGKSKHKPDLQGGGCEDGDENSKKANKSKKKGEKRPKEPRFAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSFQDPSIVITTYEGQHNHPCPATIRGNAAAMLPTSFFSSATVGSSFPQEFLTQMLPPNNQSGPNSMYYHNITPHHQQQFQLPDYGLLQDIVPSFIRKQEP* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 878933 881289 + Vvi12g44 Vvi12g44 772567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g44 311 MobiDBLite consensus disorder prediction 86 118 - -
Vvi12g44 311 SMART WRKY_cls 172 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g44 311 MobiDBLite consensus disorder prediction 86 162 - -
Vvi12g44 311 Pfam WRKY DNA -binding domain 173 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g44 311 Gene3D WRKY domain 157 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g44 311 ProSiteProfiles WRKY domain profile. 167 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g44 311 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 305 IPR044810 GO:0003700
Vvi12g44 311 MobiDBLite consensus disorder prediction 119 147 - -
Vvi12g44 311 SUPERFAMILY WRKY DNA-binding domain 164 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g44 311 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 18 305 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g357 Vvi12g44 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13806 PF03106 WRKY 3.80E-26 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g44 - - vvi:100267688 645.58