Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g443 ATGGTCGATAACGGCATCTTCCGCTCAGGTTTTCCCGACACAGCCAACTTCGCCTTCTTGCAAACCCTAGGTCTCCGTTCAATCATATACCTTTGCCCGGAGACGTATCCGGAGGCGAATAATGAGTTCCTCAAGTCGAATGGGATTAAGCTTTTTCAGTTTGGAATTGAAGGATATAAGGAGCCTTTTGTGAACATCCCAGAGGATACAATCCGTGAAGCGCTAAAAGTTGTTCTTGATGTAAGGAATCATCCACTTCTAATCCATTGCAAAAGAGGGAAGCACCGGACAGGTTGCGTTGTGGGATGCTTAAGAAAATTGCAAAAATGGTGCTTGTCATCTATTTTTGATGAGTACCAGCGGTTCGCAGCTGCTAAAGCTAGAGTTTCGGATCAAAGGTTTATGGAGTTGTTTGATGTCTCAAGCATGAAGCACCTACCAATTTCATTTTCATGTTCAAAGAGGTAA 468 43.59 MVDNGIFRSGFPDTANFAFLQTLGLRSIIYLCPETYPEANNEFLKSNGIKLFQFGIEGYKEPFVNIPEDTIREALKVVLDVRNHPLLIHCKRGKHRTGCVVGCLRKLQKWCLSSIFDEYQRFAAAKARVSDQRFMELFDVSSMKHLPISFSCSKR* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6322316 6327193 - Vvi12g443 Vvi12g443 772966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g443 155 PANTHER TYROSINE-PROTEIN PHOSPHATASE 1 153 - -
Vvi12g443 155 Gene3D Protein tyrosine phosphatase superfamily 1 142 IPR029021 -
Vvi12g443 155 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 139 IPR029021 -
Vvi12g443 155 CDD PFA-DSP_Siw14 1 139 - -
Vvi12g443 155 PRINTS Plant and fungal dual specificity phosphatase signature 30 43 IPR020428 GO:0016791
Vvi12g443 155 PRINTS Plant and fungal dual specificity phosphatase signature 49 63 IPR020428 GO:0016791
Vvi12g443 155 PRINTS Plant and fungal dual specificity phosphatase signature 66 80 IPR020428 GO:0016791
Vvi12g443 155 Pfam Tyrosine phosphatase family 1 145 IPR004861 -
Vvi12g443 155 ProSitePatterns Tyrosine specific protein phosphatases active site. 88 98 IPR016130 GO:0016311|GO:0016791
Vvi12g443 155 ProSiteProfiles Dual specificity protein phosphatase domain profile. 1 152 IPR020422 GO:0006470|GO:0008138
Vvi12g443 155 PANTHER PHOSPHOTYROSINE PROTEIN PHOSPHATASES SUPERFAMILY PROTEIN ISOFORM 1 1 153 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g443 K18045 - vvi:100251662 321.242