Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g446 ATGCTGGATAATCGGCAAGTTCAGAGCAATGGCGTGTCGAATCCGTCGTCGGAAAACGTGGAAGAAGCAATTTTGCGGTTGAAAATACATGATAATCAGGAGGAAGGTAGTGTGGGTCACTCAAGTCCTTATCCTGACCGTCCTGGGGAACCTGATTGCATATATTATTTAAGGACTGGGTTATGTGGTTATGGAAGCAATTGTCGTTTCAATCATCCTGCTTATTCTGAACAGGGTGCCCAGTATAGAGGTGAACTCCCAGAAAGAGTTGGACAACCTGACTGTGGGTACTTTTTGAAGACAGGAACCTGCAAATATGGATCTACATGTAAATATCATCACCCACGGGACAGGCATGGTGCTGGACCAGTCTCATTGAACATTGTAGGTCTACCCATGCGTCAGGAAGAAAAACCATGTTCTTACTACATGCGAACTGGGTTGTGTAAGTTTGGAGCTGCATGCAAGTTTCATCATCCCCAGCCTGCATCAGCTGGAACTGTTTTGCCTGCAACTGGTCCTGCTGCCTTTGGATCTACAGGCTCATCAATTTTACCTTCATCAGGGTTACCGTATGTGGGCGGTCTTCCAGCATGGTCATTACCAAGAGCACCATATATACCTGGCCCGCGTATGCAAGGTCCACAGACCTACATGCCTATTGTTCTTTCTCCTTCTCAAGGCATCGTACCTGCACAAGGCTGGAACACTTACATGGGAAACATGAGTCCCATATCTTCAACTGGTATTCTGGGATCCAATCTTGTCTACAACTCCAGGAATCAGAGTGAGTCAGGTTCCAGTGGGCAGGTGCACTTGTTATCATCATTGATTCCACATTTACCTGAGAGGCCAGATCAACCAGAATGCCGGTATTTCATGAGCACGGGGAGCTGTAAATATGGTTCTGATTGCAAGTATCATCACCCAAAAGAAAGGATTGCTCAGTTGGCAACAAATACTTTAGGTCCGCTTGGTCTTCCCTTGAGACCAGGGCAAGCTGTATGTTCTCACTACAATTTGTATGGACTTTGCAAGTATGGTCCGACTTGCAAATTTGACCACCCCTTGACCGGATATTCTTCTTATAATTACTGTTTGAGCCTGCCCCCTCTATCTATACTTGACCCATCTCTCTTACCTTATCAAAGAAACTCTTCCACGGTTCATTCATCTGAAACCTCTCCCTCTAAATCGTCAAAATTTCCTGATTGGGTCCAGAAAACTGAGTCTGGAAGCACCAAGTCTCAGAATCCAGATACAAAAGCTCCTGAAGGTCCACCAGAACAGGCTGGTTCTCTGCTGCATTCCTCGCCAAATTCATCTGAACCTCCACAAGATCAATCTGATTGA 1353 45.75 MLDNRQVQSNGVSNPSSENVEEAILRLKIHDNQEEGSVGHSSPYPDRPGEPDCIYYLRTGLCGYGSNCRFNHPAYSEQGAQYRGELPERVGQPDCGYFLKTGTCKYGSTCKYHHPRDRHGAGPVSLNIVGLPMRQEEKPCSYYMRTGLCKFGAACKFHHPQPASAGTVLPATGPAAFGSTGSSILPSSGLPYVGGLPAWSLPRAPYIPGPRMQGPQTYMPIVLSPSQGIVPAQGWNTYMGNMSPISSTGILGSNLVYNSRNQSESGSSGQVHLLSSLIPHLPERPDQPECRYFMSTGSCKYGSDCKYHHPKERIAQLATNTLGPLGLPLRPGQAVCSHYNLYGLCKYGPTCKFDHPLTGYSSYNYCLSLPPLSILDPSLLPYQRNSSTVHSSETSPSKSSKFPDWVQKTESGSTKSQNPDTKAPEGPPEQAGSLLHSSPNSSEPPQDQSD* 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6379508 6386017 + Vvi12g446 Vvi12g446 772969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g446 450 Gene3D - 124 171 - -
Vvi12g446 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872
Vvi12g446 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Vvi12g446 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Vvi12g446 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 286 311 IPR000571 GO:0046872
Vvi12g446 450 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 332 356 IPR000571 GO:0046872
Vvi12g446 450 SUPERFAMILY CCCH zinc finger 329 356 IPR036855 GO:0046872
Vvi12g446 450 ProSiteProfiles Zinc finger C3H1-type profile. 284 312 IPR000571 GO:0046872
Vvi12g446 450 PANTHER PROTEIN PHOSPHATASE RELATED 4 419 - -
Vvi12g446 450 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Vvi12g446 450 ProSiteProfiles Zinc finger C3H1-type profile. 330 358 IPR000571 GO:0046872
Vvi12g446 450 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Vvi12g446 450 Gene3D - 285 360 - -
Vvi12g446 450 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vvi12g446 450 Gene3D - 41 121 - -
Vvi12g446 450 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Vvi12g446 450 SMART c3hfinal6 284 311 IPR000571 GO:0046872
Vvi12g446 450 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Vvi12g446 450 SMART c3hfinal6 330 357 IPR000571 GO:0046872
Vvi12g446 450 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vvi12g446 450 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 4 419 - -
Vvi12g446 450 MobiDBLite consensus disorder prediction 384 423 - -
Vvi12g446 450 MobiDBLite consensus disorder prediction 384 450 - -
Vvi12g446 450 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Vvi12g446 450 SUPERFAMILY CCCH zinc finger 287 313 IPR036855 GO:0046872
Vvi12g446 450 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Vvi12g446 450 MobiDBLite consensus disorder prediction 433 450 - -
Vvi12g446 450 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13807 PF00642 zf-CCCH 1.00E-07 CL0537 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g446 - - vvi:100246519 920.613