Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g447 ATGGCCATTTTGGTCATTTTGCAACAAGAGGTCAGGAATCAGGGCAAAGATGTGAGGTTCAGAGGCGTGAGGAAGAGACCTTGGGGCCGTTTCGCCGCCGAGATCCGGGACCCGTGGAAGAAGACTCGGGTCTGGCTCGGCACCTTCGACTCCGCGGAGGATGCAGCCCGAGCCTACGACGCCGCCGCTCGATCCCTCCGCGGTCCCAAGGCCAAGACCAATTTTCCAGGCCAACCACGAGCGGTATGA 249 60.64 MAILVILQQEVRNQGKDVRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPGQPRAV* 83
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6403231 6404450 + Vvi12g447 Vvi12g447 772970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g447 82 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 14 77 - -
Vvi12g447 82 SUPERFAMILY DNA-binding domain 20 76 IPR016177 GO:0003677
Vvi12g447 82 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Vvi12g447 82 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 77 - -
Vvi12g447 82 CDD AP2 19 76 IPR001471 GO:0003700|GO:0006355
Vvi12g447 82 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Vvi12g447 82 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Vvi12g447 82 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Vvi12g447 82 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Vvi12g447 82 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g447 Vvi19g564 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13808 PF00847 AP2 6.70E-15 CL0081 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g447 K09286 - vvi:100241392 133.65