Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g45 ATGAAGCTAGATTTGGAGTTCCCTCCTGTTGCCTGTTGGATTAGATTTTTGTCTGGCCTTCATCAACATCTCTTTTATCATTCTCTCAATTCTTTTTTGGCCCACTTCAGGCCACAAAGCTCTACTTGTAAACTACTCCTTCTGGGGCTGTTGCCTTTTGTTTTGGCCTATTGGGTTTTGGTGGGTTTGTGTTATTTCAGGTCTACATTGGCCTATCTATGCTCATTGTGTCTCTCTTGCCTAAAAAAGAAGCCCTTTCTTTTCTTCTCTGGGTTCTCAAGGAGGAAGATCAAGGGGGTTAGCTTAGATCACCACAAAGGTGGAAATGTCTTGAGTTTGCATCACAAGGAGGAAGCACAATTTTCATTCTTTGCTACCAGAGCATCAGAAATGTCATCGCAGAAATCTTTGGACACTGAATTGTCGAAGAAATTTCTGGGTCTAAAACTTTGGGTTTTAATTGGTGTATGTGTTGGTGCATTCATAGTTTTGATTCTATGTATCTTATCTATATGGGTCATGTTCAGACGAAAATCTCGAAGAACCCTTGACAAATTCACCCTTTCTCAAATACCCAATGTCTCTAAAGATATCAAGGTTGACAGGATTGGGACTCAGAATTTTCATGATGAAAGTTTATTCCTTAATGTCAATGATAAATCAACTGACAGAAATTCTGAGAAGATGTATCATTTGGGTGTGAGCAAATCAAGTGATCCTGACAATGTCAGCCAGTGCAGCTCCATTTATCATCATGAGAGAGGCTGTAGTTCACAATCAGGGGAAGAAGGAAGTTCTGGAACTGTTCGGAAGCATTCTTCATTGTCATATGGGCTTGCATCAGCCTCTCCTTTAATCGGTTTACCAGAAGTGTCTCATCTTGGTTGGGGCCACTGGTTTACTCTTAGAGATCTTGAGTATGCAACAAGTCGTTTCTCAGCTGAAAATGTGCTTGGGGAAGGTGGATATGGAGTTGTCTATAAGGGCAGACTAATCAATGGAGCTGAGGTAGCAGTGAAGAAGCTTCTTAATAATCTGGGACAGGCAGAAAAAGAGTTCAGGGTTGAAGTTGAGGCTATAGGCCATGTTCGGCATAAAAATCTTGTGCGACTTTTGGGCTATTGCATAGAAGGAGTTCACAGGATGCTGGTGTATGAATATGTGAACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCGCTTGCCTATTTGCATGAGGCAATAGAACCGAAAGTTGTTCATCGAGACATAAAATCAAGCAACATCTTGATTGATGATGAGTTCAATGCAAAGGTTTCTGATTTTGGATTGGCCAAGCTCTTGGGCTCAGGTGAAAGCCACATAACGACTAGAGTAATGGGAACATTTGGTTATGTGGCACCAGAATATGCTAATACTGGCTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGGTTAATCTTGTCGAGTGGCTTAAAGTGATGGTAGGGACAAGAAGAGCTGAAGAAGTTGTGGATCCAAACCTTGAAGTTAAGCCCACAACACGTGCTCTAAAACGCGCTCTTCTTGTCGCCCTTAGGTGTGTTGACCCTGACTCAGAAAAGAGACCCAAAATGAGTCAGGTTGTTCGAATGCTCGAACAGGATGAATACCCATTTCGTGAGGACCGAAGGAAGAGCCGAACAACCAGCATGGACCTTGAGTCCATGAAGGAGAACTCTGGTTCAGGCGACGTGGAGAACAAGGTAAATGAATCAGAGTGCCATACTTCAGAGGCGATTCATGGATAG 1902 43.11 MKLDLEFPPVACWIRFLSGLHQHLFYHSLNSFLAHFRPQSSTCKLLLLGLLPFVLAYWVLVGLCYFRSTLAYLCSLCLSCLKKKPFLFFSGFSRRKIKGVSLDHHKGGNVLSLHHKEEAQFSFFATRASEMSSQKSLDTELSKKFLGLKLWVLIGVCVGAFIVLILCILSIWVMFRRKSRRTLDKFTLSQIPNVSKDIKVDRIGTQNFHDESLFLNVNDKSTDRNSEKMYHLGVSKSSDPDNVSQCSSIYHHERGCSSQSGEEGSSGTVRKHSSLSYGLASASPLIGLPEVSHLGWGHWFTLRDLEYATSRFSAENVLGEGGYGVVYKGRLINGAEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQYGNLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVVDPNLEVKPTTRALKRALLVALRCVDPDSEKRPKMSQVVRMLEQDEYPFREDRRKSRTTSMDLESMKENSGSGDVENKVNESECHTSEAIHG* 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 910385 915231 - Vvi12g45 Vvi12g45 772568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g45 633 ProSiteProfiles Protein kinase domain profile. 312 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g45 633 SMART serkin_6 312 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g45 633 ProSitePatterns Protein kinases ATP-binding region signature. 318 341 IPR017441 GO:0005524
Vvi12g45 633 Coils Coil 332 352 - -
Vvi12g45 633 MobiDBLite consensus disorder prediction 619 633 - -
Vvi12g45 633 Gene3D Transferase(Phosphotransferase) domain 1 388 601 - -
Vvi12g45 633 PANTHER OS10G0497600 PROTEIN 132 630 - -
Vvi12g45 633 MobiDBLite consensus disorder prediction 604 618 - -
Vvi12g45 633 MobiDBLite consensus disorder prediction 590 633 - -
Vvi12g45 633 Pfam Protein kinase domain 314 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g45 633 PANTHER OS01G0323000 PROTEIN 132 630 - -
Vvi12g45 633 CDD STKc_IRAK 318 585 - -
Vvi12g45 633 Gene3D Phosphorylase Kinase; domain 1 293 387 - -
Vvi12g45 633 SUPERFAMILY Protein kinase-like (PK-like) 296 591 IPR011009 -
Vvi12g45 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76116 PF00069 Pkinase 5.40E-48 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g45 - - vvi:100245375 993.801