Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g46 ATGAGAAAATCTGTGGCAAAATCTAAAGCAGTTTCTTCAGGAAGCCCCTGGTATGGCCCTGACCGAGTCAAGTACTTGGGGCCCTTCTCTGCTGATCCGGAGACCTTCGCCAAGAATCGTGAGCTTGAGGTCATCCACTGCAGGTGGGCAATGCTTGGAGCTCTCGGATGCGTCTTCCCGGAGCTTCTGTCGCGCAACGGGGTCAAGTTTGGGGAGGCAGTGATCCTGATGGGCGCAGTTGAGGGCTACCGCATTGCCGGAGGACCACTTGGGGAGGTGAAGGAGATCAAGAATGGGAGGCTGGCCATGTTTTCCATGTTTGGCTTCTTTGTTCAGGCTATTGTCACCGGAAAGGGTCCACTGGAGAACTTGGCTGACCACCTTGCCGACCCCGTTAACAACAATGCTTGGGCATATGCCACAAACTTTGTTCCTGGCAAGTGA 444 54.28 MRKSVAKSKAVSSGSPWYGPDRVKYLGPFSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVILMGAVEGYRIAGGPLGEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK* 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 931628 933319 - Vvi12g46 Vvi12g46 772569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g46 147 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 74 93 - -
Vvi12g46 147 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 29 75 - -
Vvi12g46 147 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 93 147 - -
Vvi12g46 147 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 30 - -
Vvi12g46 147 Gene3D Chlorophyll a/b binding protein domain 26 88 - -
Vvi12g46 147 SUPERFAMILY Chlorophyll a-b binding protein 18 144 - -
Vvi12g46 147 Pfam Chlorophyll A-B binding protein 93 113 IPR022796 -
Vvi12g46 147 Pfam Chlorophyll A-B binding protein 29 68 IPR022796 -
Vvi12g46 147 Gene3D Chlorophyll a/b binding protein domain 89 144 - -
Vvi12g46 147 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 93 147 IPR001344 GO:0009765|GO:0016020
Vvi12g46 147 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 29 75 IPR001344 GO:0009765|GO:0016020
Vvi12g46 147 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 30 IPR001344 GO:0009765|GO:0016020
Vvi12g46 147 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 74 93 IPR001344 GO:0009765|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g366 Vvi12g46 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g46 K08912 - vvi:100250504 249.21