Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g464 ATGAGGAAGAGGGAGAGGGAGAACCCGTGCGGGGTTTGTGGCCACTACCACAAATATGAGGAAGGAGAGGTTTGTGGTGTTTGTGGCCACCGGATTCCGGCATCATCAGAGAAAACTTCGATTCAGGTGAGCGCTTTTCCGTCAGAGATCCTGCCGGAGTTTCTGTATTTGGGCAGCTACGATAACGCATCGCGCTCGGAGCTTCTCAAGACTCAGGGAATCTCTCGCGTTCTCAATACGGTACCTGCTTGTCAAAATCTCTACAAAAATTCCTTCACTTATTACTGCCTACCAGATGACAAAAGTTTACCGTTTGATGATGCAATTCAGTTTTTAGAGCAATGTGAAAAGGACAAGGCTCGTGTTCTTGTACATTGCATGTCGGGAAAAAATAGGTCACCAGCTATTGTAATAGCGTACTTGATGAAGTGCAAAGGATGGAGGTTTGCACAGAGCTATCAGTGGGTGAAAGAGCGGAGACCATCTGTTGAACTATCTCAAGCTGTTCACGAGCAGTTGCAGGAGTATGAGCGGAGTATTTTTGGGTCGATGGAGAGCATTAGCCCCACCATGCCAATCTTCCAACCTTCAGGGGCAGCATCCTTTACCTTTGGCTTCCCAAAGGCCAATGATCCACTTCCTGCTCCTGCCTTCAACACCATTGGTGCTGCATCCATTTTTGCTCGTCCTCCTGCAGACGTTCCTCCACATGAGTTCAAGTTCGGTGCTGGCCAGACCGACAAGAATATCGTGGAGAGCCCTTTCATTGCCAACCCATCAAATCCAAATAGCAGTGATATTCCCATGGACAGCTCCTGA 819 48.35 MRKRERENPCGVCGHYHKYEEGEVCGVCGHRIPASSEKTSIQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYYCLPDDKSLPFDDAIQFLEQCEKDKARVLVHCMSGKNRSPAIVIAYLMKCKGWRFAQSYQWVKERRPSVELSQAVHEQLQEYERSIFGSMESISPTMPIFQPSGAASFTFGFPKANDPLPAPAFNTIGAASIFARPPADVPPHEFKFGAGQTDKNIVESPFIANPSNPNSSDIPMDSS* 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6548226 6561979 - Vvi12g464 Vvi12g464 772987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g464 272 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311|GO:0016791
Vvi12g464 272 Gene3D Protein tyrosine phosphatase superfamily 33 186 IPR029021 -
Vvi12g464 272 CDD DSP_plant_IBR5-like 47 176 - -
Vvi12g464 272 Pfam Dual specificity phosphatase, catalytic domain 55 178 IPR000340 GO:0008138|GO:0016311
Vvi12g464 272 MobiDBLite consensus disorder prediction 251 272 - -
Vvi12g464 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470|GO:0008138
Vvi12g464 272 SMART dsp_5 46 179 IPR020422 GO:0006470|GO:0008138
Vvi12g464 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 272 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Vvi12g464 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Vvi12g464 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311|GO:0016791
Vvi12g464 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 272 - -
Vvi12g464 272 MobiDBLite consensus disorder prediction 250 272 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g464 K04459 - vvi:100249965 564.688