Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g473 ATGGCGTGTACGGCTAAGATCTCCATCAAGGCGGTGATAGCAGCATATAAAGATGGGTTCGCGCCGGCGTACGAAGGAGTGTCCCACGTCGGGGGTGACATGTTCGAGTCCATCCCTGACGCTGATGCAATCTTCATGAAGTGGATATTGCACGATTGGAATGACGAAGACTGCGTCAAGATCTTAAAAAACTGTCGGAAAGCAATACCGGAGAAAACTGGGAAAGTTATCATCGTTGATGGAGTGATCCGAGAAGATGGCTATGAGCCATTTGATGAAACAAGGCTGGTGTTGGATTTAGTGATGATGGCGCATACCTCTCACGGGCAAGAGAGAACCGAGGTTGAATGGAAGAAATTATTGGAGGAAGGAGGGTTTCCTCGTTACAGAATCTTAAAGATTCCAACTTTGCAGATGATAATCGAGGCTTATCCAGTGTAG 441 46.94 MACTAKISIKAVIAAYKDGFAPAYEGVSHVGGDMFESIPDADAIFMKWILHDWNDEDCVKILKNCRKAIPEKTGKVIIVDGVIREDGYEPFDETRLVLDLVMMAHTSHGQERTEVEWKKLLEEGGFPRYRILKIPTLQMIIEAYPV* 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6622247 6623826 + Vvi12g473 Vvi12g473 772996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g473 146 Gene3D Vaccinia Virus protein VP39 7 146 IPR029063 -
Vvi12g473 146 Pfam O-methyltransferase domain 11 126 IPR001077 GO:0008171
Vvi12g473 146 PANTHER O-METHYLTRANSFERASE 22 145 IPR016461 GO:0008168
Vvi12g473 146 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 22 145 - -
Vvi12g473 146 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 145 IPR016461 GO:0008168
Vvi12g473 146 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 20 143 IPR029063 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi10g37 Vvi12g473 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g473 K22588 - vvi:100256875 282.722