Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g480 ATGGGAGGTTGTGTGTCAACTAGCAGTCGGAGTACTTGTAGTAGCAGGGGCAATGGAAAGAGAGTTTCTCCATCTTGTATGGGGATTGGGATTTGTAGGCGAAAGAGAACTAAGAAAACATTTGCAGACCATGTCAATACATTGCAACATTTGCCCTCAATCCCCAACCGAATTTTCACGAATGGGAAGAGCCGAGCTTCCTGCATATTTACTCAGCAGGGCCGGAAGGGCATAAACCAGGATGCCATGATTGTGTGGGAAGATTTTATGTCGGACGATGTGACTTTTTGTGGTGTTTTTGACGGTCATGGTCCACATGGTCATCTTGTTGCCCGCAAAGTGAGGGATGCTTTGCCATTAAAGCTACTGTCATTCTTGCATTCTTATCAGTCAAGGCAAAACGGGTCCAGCACTGCTTGTTTCAAATCAGATTTGAAGAAGCTGGATGGTGGAGATTCTGAAAAGGACAGCTCAACCGAGGATAAACTGGACTGTCTATGGAGAGAAGCTTTCCTCAAGTCATACAAAGCCATGGACAAAGAATTAAGGTCCCATCCTAACTTGGATTGCTTCTGCAGTGGTAGCACCGCTGTTACTATAGTGAGACAGGGTTCAAATCTTTTCATGGGATATATTGGGGATTCACGAGCAATCTTGGGATCCAAGGACAGCAGTGATTCCATGGTGGCAATCCAGTTGACAGTTGATCTAAAACCTGATTTACCCAGGGAAGCTGAGAGGATTAAACGATGTAAAGGTAGGGTCTTTGCATTGCAAGATGAGCCTGAAGTGCCTAGAGTTTGGCTACCTTTTGATGATGCCCCTGGATTAGCCATGGCTCGAGCATTTGGGGATTTTTGTTTGAAGGAGTATGGGGTCATCTCTATACCAGAATTCTCTCACCGAATGCTTACAGATAGGGATCAGTTCATTGTTCTTGCTTCTGATGGGGTCTGGGATGTTTTGAGCAATGAAGAAGTGGTTGAGATAGTGTCCTCAGCTCCAACCCGTTCATCTGCTGCGAGGATCCTGGTGGACTCAGCTGCTCGTGAATGGAAACTCAAATACCCAACTTCAAAGATGGATGACTGTGCGGTGGTTTGCTTATTTTTGGATGGGAAAATGGACTCTGAATCTGATTACGAGGAACAAGGTTTTTCTACGGCCACCCTCCAAAGCAACCATTCTGAAAATGATTCTTTCAGAAGAATACCGATTGAGATTGAAGGTCACGAAGAAACGGTAATGGCAGAAGATCAGAACTGGTTGGGTTTGGAGGGTGTCACTCGAGTTAACTCGCTTGTTCAACTTCCAAGATTTTCAGAAGAGAGGCCAAACTCCTAA 1344 45.16 MGGCVSTSSRSTCSSRGNGKRVSPSCMGIGICRRKRTKKTFADHVNTLQHLPSIPNRIFTNGKSRASCIFTQQGRKGINQDAMIVWEDFMSDDVTFCGVFDGHGPHGHLVARKVRDALPLKLLSFLHSYQSRQNGSSTACFKSDLKKLDGGDSEKDSSTEDKLDCLWREAFLKSYKAMDKELRSHPNLDCFCSGSTAVTIVRQGSNLFMGYIGDSRAILGSKDSSDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRMLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDYEEQGFSTATLQSNHSENDSFRRIPIEIEGHEETVMAEDQNWLGLEGVTRVNSLVQLPRFSEERPNS* 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6691308 6697009 + Vvi12g480 Vvi12g480 773003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g480 447 Pfam Protein phosphatase 2C 147 348 IPR001932 -
Vvi12g480 447 Gene3D - 59 379 IPR036457 -
Vvi12g480 447 SMART PP2C_4 50 369 IPR001932 -
Vvi12g480 447 MobiDBLite consensus disorder prediction 1 21 - -
Vvi12g480 447 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 396 - -
Vvi12g480 447 MobiDBLite consensus disorder prediction 1 22 - -
Vvi12g480 447 CDD PP2Cc 72 371 IPR001932 -
Vvi12g480 447 ProSiteProfiles PPM-type phosphatase domain profile. 66 371 IPR001932 -
Vvi12g480 447 SUPERFAMILY PP2C-like 57 373 IPR036457 -
Vvi12g480 447 PANTHER ALPHABET, ISOFORM E-RELATED 1 396 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g480 - - vvi:100258592 883.634