Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g488 ATGGGTGGGAAGAGATCTGCTATAGATTGCTTGAATTTGGAGATCTATGCACAGACTTTCGTGGGCTTTGTGTTGATTTTTGCGGCGCAAGTTTTGCTTGGATATACCAGCCCTGGCGATGTTACTGCAATTAATAACTTATACGCTGCATTGGGTAGCCCCCTTCTTCCTGGATGGGTGTCTACTGGGGGAGACCCATGTGCTGATGCTTGGCAAGGAGTCTCATGTAACGGCTCGGAGATAAATTCAATAATTCTTAATGGTGCCAATTTGGGAGGAGAACTAGGTGATAGCTTGGGAACTTTTGCTTCTATCAAAGTGATAGACCTGAGCAACAACCAGATTGGGGGTAGTATTCCATCCAGTTTACCCCTTACCTTGCAGAACTTTTTTCTTTCAGCTAATCAGTTCACTGGAAGCATCCCAACTTCGTTATCCTCTCTTAGCTTACTTACAGACATGTCTCTAAACAACAATCTTTTAACTGGAGAGATCCCTGATGCGTTTCAAGCCCTTGTGGGTTTGATCAATCTAGATCTATCCAGTAACCATTTGAGTGGGCAATTGCCTCCATCAATGGAAAACTTGTCGTCGCTGACCACTCTGCGTTTGCAGATCAATCAGCTATCTGGGACCCTAGATGTTCTACAAGATCTTCCCCTTAAAGATTTGAATGTAGAGAATAACCTGTTCTCTGGAACGATACCTGATAAGTTGCTAAGCATTCCAAATTTCAGAAAAGATGGAAATCCATTCGGCAATGTTACTGCTCCTTTGCTTGCACCCACATCCCCATTGACACTCCCATCACCACCTCCTCCACTTTCTGGGCCGCCATCTTCCAACCAACCACCTGTGAAACCAGCTGATGGGCCATCTGCAACAGAGGAATCAAATTCAGGGGGGAAAGGAAAAGGTTTAAGCACTAAAAGGATAGTTTGGATATCAATTACAGTGGTCTTGGTATTTATAATTTTGGTGCTGGCACTTGTGCTTCTTGTAAAATGGTGTTGTGGAGAAAGGCAAGAGTCTGACTGGATATCTAAGCGAAATGAAACCGGTGCATATAAAGGCAGCAGATTGAATCTTAGAGATAATGGATCCTTGGAACAGCAAGTTCCAAAAGAGGCAGTTGGCACACCCAAGGAGGAACATCAAGAAGTGGTTAGAAGAATAGGTGTGGCTCCAAAGCCACAAAATGAACAAGATCGAAATGTGGAAAGAATGTTCACAATACCAAAGCAGGACAGTCATGAGATAGATATAAGTGGACTTGATGTGATGATGCCACCTCCTCCCCCTCCTCCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCTTGTTGAAACAGTTATTGTAAACCCAATTGTGCCAGTTGAAGTAAATGCAGAAAAACCTTCCATGAAAACTCTGAACCCCCCGATCTCTGCAAGATCTTTCACGATTGCATCACTTCAGCAATACACAAACAGCTTTTCTCAAGAGAATCTGATTGGATCGGGCATGCTGGGAACTGTCTATAGGGCACAGCTTCCTGGTGGAAAGCTACTTGCAGTCAAGAAACTGGACAAAAAGATTTGTAATCAGCAGAAGGATGATGAGTTTTTTGACCTGGTAAACAGTATTGATGGAATTCGACATGCTAATGTTGTCGAGCTCATGGGATACTGTGCGGAGCATGGTGAAAGACTTCTTATTTATGAGTATTGCAGTGATGGGACACTGCACGATGCCCTGCACTCAGATGATGAATTTAAGAAGAAACTTTCATGGAGTGCCCGGGTACGGATGGCGCTTGGAGCTGCTAGAGCCTTGCAGTATCTGCATGAGGTCTGTCGTCCACCTATTGTACACAGGAATTTCAAGTCTGCAAATGTGCTCCTTGATGATGAGCTCACCGTACGTGTCTCTGATTGTGGTTTGGCTCCTTTAATATCAAGATGTTCTGTAAGTCAGTTGTCAGGACGCTTATCGGCATATGGCTGTGAAGCCCCAGAACATGAGTCTGGGATTTATACTTTGAAGAGTGATGTCTACAGCTTTGGAGCAGTAATGTTAGAACTCTTGACAGGACGAAAGTCCTATGACAGCAAACGCAACCGAGGAGAAAAATTGCTGGTGAGATGGGCCATCCATCAGCTTCATGACATTGATGCTTTGTCAAGGATGGTTGATCCTTCATTGAATGGAGAATACCCTGCTAAATCTTTATCCCGCTTTGCTGACATTATCTCTCGGTGTGTTCAGGACGAGCCAGAATTCAGGCCACAAATGTCTGAAGTTGTGGACGACCTCATAGACATGATACAGAAAGAGGCTTCCAATAGATCAAATGGCGACTAA 2346 44.59 MGGKRSAIDCLNLEIYAQTFVGFVLIFAAQVLLGYTSPGDVTAINNLYAALGSPLLPGWVSTGGDPCADAWQGVSCNGSEINSIILNGANLGGELGDSLGTFASIKVIDLSNNQIGGSIPSSLPLTLQNFFLSANQFTGSIPTSLSSLSLLTDMSLNNNLLTGEIPDAFQALVGLINLDLSSNHLSGQLPPSMENLSSLTTLRLQINQLSGTLDVLQDLPLKDLNVENNLFSGTIPDKLLSIPNFRKDGNPFGNVTAPLLAPTSPLTLPSPPPPLSGPPSSNQPPVKPADGPSATEESNSGGKGKGLSTKRIVWISITVVLVFIILVLALVLLVKWCCGERQESDWISKRNETGAYKGSRLNLRDNGSLEQQVPKEAVGTPKEEHQEVVRRIGVAPKPQNEQDRNVERMFTIPKQDSHEIDISGLDVMMPPPPPPPPPPPPPPPPPPLVETVIVNPIVPVEVNAEKPSMKTLNPPISARSFTIASLQQYTNSFSQENLIGSGMLGTVYRAQLPGGKLLAVKKLDKKICNQQKDDEFFDLVNSIDGIRHANVVELMGYCAEHGERLLIYEYCSDGTLHDALHSDDEFKKKLSWSARVRMALGAARALQYLHEVCRPPIVHRNFKSANVLLDDELTVRVSDCGLAPLISRCSVSQLSGRLSAYGCEAPEHESGIYTLKSDVYSFGAVMLELLTGRKSYDSKRNRGEKLLVRWAIHQLHDIDALSRMVDPSLNGEYPAKSLSRFADIISRCVQDEPEFRPQMSEVVDDLIDMIQKEASNRSNGD* 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6779070 6789767 + Vvi12g488 Vvi12g488 773011

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g488 781 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Vvi12g488 781 SUPERFAMILY Protein kinase-like (PK-like) 471 766 IPR011009 -
Vvi12g488 781 ProSiteProfiles Protein kinase domain profile. 493 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g488 781 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 25 779 - -
Vvi12g488 781 MobiDBLite consensus disorder prediction 358 384 - -
Vvi12g488 781 MobiDBLite consensus disorder prediction 264 286 - -
Vvi12g488 781 Pfam Protein tyrosine and serine/threonine kinase 496 766 IPR001245 GO:0004672|GO:0006468
Vvi12g488 781 PANTHER OS01G0253100 PROTEIN 25 779 IPR045271 GO:0004714|GO:0006468
Vvi12g488 781 Gene3D Transferase(Phosphotransferase) domain 1 572 780 - -
Vvi12g488 781 Gene3D Ribonuclease Inhibitor 40 254 IPR032675 -
Vvi12g488 781 Gene3D Phosphorylase Kinase; domain 1 460 570 - -
Vvi12g488 781 SUPERFAMILY L domain-like 36 244 - -
Vvi12g488 781 MobiDBLite consensus disorder prediction 427 447 - -
Vvi12g488 781 MobiDBLite consensus disorder prediction 263 306 - -
Vvi12g488 781 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g488 - - - vvi:100248332 1417.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi12g488 . 25 773 Strubbelig Receptor Gene Family AT4G03390 62.1 8.2e-198 687.6
Vvi8g1247 . 2 738 Strubbelig Receptor Gene Family AT5G06820 54.2 1.9e-188 656.4
Vvi9g1107 . 29 691 Strubbelig Receptor Gene Family AT1G78980 59.4 1.3e-173 607.1
Vvi9g7 . 19 683 Strubbelig Receptor Gene Family AT1G78980 52.5 1.1e-132 471.1
Vvi12g488 . 20 655 Strubbelig Receptor Gene Family AT2G20850 50.6 1.8e-134 476.9
Vvi9g1107 . 1 682 Strubbelig Receptor Gene Family AT3G13065 54.9 2.6e-139 493.0
Vvi9g7 . 13 678 Strubbelig Receptor Gene Family AT3G13065 52.2 9.4e-113 404.8
Vvi9g7 . 387 678 Strubbelig Receptor Gene Family AT1G11130 52.7 1.8e-84 310.8
Vvi9g1107 . 395 682 Strubbelig Receptor Gene Family AT1G11130 50.3 6.1e-80 295.8
Vvi12g488 . 20 655 Strubbelig Receptor Gene Family AT2G20850 50.6 1.8e-134 476.9
Vvi8g1247 . 2 738 Strubbelig Receptor Gene Family AT5G06820 54.2 1.9e-188 656.4
Vvi12g488 . 25 773 Strubbelig Receptor Gene Family AT4G03390 62.1 8.2e-198 687.6
Vvi9g1107 . 1 682 Strubbelig Receptor Gene Family AT3G13065 54.9 2.6e-139 493.0
Vvi9g7 . 13 678 Strubbelig Receptor Gene Family AT3G13065 52.2 9.4e-113 404.8
Vvi9g1107 . 29 691 Strubbelig Receptor Gene Family AT1G78980 59.4 1.3e-173 607.1
Vvi9g7 . 19 683 Strubbelig Receptor Gene Family AT1G78980 52.5 1.1e-132 471.1
Vvi9g7 . 2 703 Strubbelig Receptor Gene Family AT1G53730 63.5 8.9e-199 690.6
Vvi10randomg5 . 17 707 Strubbelig Receptor Gene Family AT1G53730 53.7 2.5e-164 576.2
Vvi9g1107 . 4 686 Strubbelig Receptor Gene Family AT1G53730 51.8 4.1e-143 505.8
Vvi9g7 . 2 695 Strubbelig Receptor Gene Family AT3G14350 56.3 2.3e-172 602.8
Vvi10randomg4 . 45 142 Strubbelig Receptor Gene Family AT3G14350 78.6 2.2e-37 154.5
Vvi10randomg5 . 217 730 Strubbelig Receptor Gene Family AT4G22130 66.3 2.1e-179 625.9
Vvi9g7 . 384 697 Strubbelig Receptor Gene Family AT4G22130 69.3 1.6e-123 440.3
Vvi12g488 . 458 781 Strubbelig Receptor Gene Family AT4G22130 56.3 6.1e-102 368.6
Vvi9g1107 . 393 691 Strubbelig Receptor Gene Family AT4G22130 58.1 2.0e-100 363.6
Vvi8g1247 . 343 699 Strubbelig Receptor Gene Family AT4G22130 52.1 3.1e-98 356.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76118 PF07714 PK_Tyr_Ser-Thr 5.70E-40 CL0016 Vvi PK