Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g488 ATGGGTGGGAAGAGATCTGCTATAGATTGCTTGAATTTGGAGATCTATGCACAGACTTTCGTGGGCTTTGTGTTGATTTTTGCGGCGCAAGTTTTGCTTGGATATACCAGCCCTGGCGATGTTACTGCAATTAATAACTTATACGCTGCATTGGGTAGCCCCCTTCTTCCTGGATGGGTGTCTACTGGGGGAGACCCATGTGCTGATGCTTGGCAAGGAGTCTCATGTAACGGCTCGGAGATAAATTCAATAATTCTTAATGGTGCCAATTTGGGAGGAGAACTAGGTGATAGCTTGGGAACTTTTGCTTCTATCAAAGTGATAGACCTGAGCAACAACCAGATTGGGGGTAGTATTCCATCCAGTTTACCCCTTACCTTGCAGAACTTTTTTCTTTCAGCTAATCAGTTCACTGGAAGCATCCCAACTTCGTTATCCTCTCTTAGCTTACTTACAGACATGTCTCTAAACAACAATCTTTTAACTGGAGAGATCCCTGATGCGTTTCAAGCCCTTGTGGGTTTGATCAATCTAGATCTATCCAGTAACCATTTGAGTGGGCAATTGCCTCCATCAATGGAAAACTTGTCGTCGCTGACCACTCTGCGTTTGCAGATCAATCAGCTATCTGGGACCCTAGATGTTCTACAAGATCTTCCCCTTAAAGATTTGAATGTAGAGAATAACCTGTTCTCTGGAACGATACCTGATAAGTTGCTAAGCATTCCAAATTTCAGAAAAGATGGAAATCCATTCGGCAATGTTACTGCTCCTTTGCTTGCACCCACATCCCCATTGACACTCCCATCACCACCTCCTCCACTTTCTGGGCCGCCATCTTCCAACCAACCACCTGTGAAACCAGCTGATGGGCCATCTGCAACAGAGGAATCAAATTCAGGGGGGAAAGGAAAAGGTTTAAGCACTAAAAGGATAGTTTGGATATCAATTACAGTGGTCTTGGTATTTATAATTTTGGTGCTGGCACTTGTGCTTCTTGTAAAATGGTGTTGTGGAGAAAGGCAAGAGTCTGACTGGATATCTAAGCGAAATGAAACCGGTGCATATAAAGGCAGCAGATTGAATCTTAGAGATAATGGATCCTTGGAACAGCAAGTTCCAAAAGAGGCAGTTGGCACACCCAAGGAGGAACATCAAGAAGTGGTTAGAAGAATAGGTGTGGCTCCAAAGCCACAAAATGAACAAGATCGAAATGTGGAAAGAATGTTCACAATACCAAAGCAGGACAGTCATGAGATAGATATAAGTGGACTTGATGTGATGATGCCACCTCCTCCCCCTCCTCCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCTCCTCTTGTTGAAACAGTTATTGTAAACCCAATTGTGCCAGTTGAAGTAAATGCAGAAAAACCTTCCATGAAAACTCTGAACCCCCCGATCTCTGCAAGATCTTTCACGATTGCATCACTTCAGCAATACACAAACAGCTTTTCTCAAGAGAATCTGATTGGATCGGGCATGCTGGGAACTGTCTATAGGGCACAGCTTCCTGGTGGAAAGCTACTTGCAGTCAAGAAACTGGACAAAAAGATTTGTAATCAGCAGAAGGATGATGAGTTTTTTGACCTGGTAAACAGTATTGATGGAATTCGACATGCTAATGTTGTCGAGCTCATGGGATACTGTGCGGAGCATGGTGAAAGACTTCTTATTTATGAGTATTGCAGTGATGGGACACTGCACGATGCCCTGCACTCAGATGATGAATTTAAGAAGAAACTTTCATGGAGTGCCCGGGTACGGATGGCGCTTGGAGCTGCTAGAGCCTTGCAGTATCTGCATGAGGTCTGTCGTCCACCTATTGTACACAGGAATTTCAAGTCTGCAAATGTGCTCCTTGATGATGAGCTCACCGTACGTGTCTCTGATTGTGGTTTGGCTCCTTTAATATCAAGATGTTCTGTAAGTCAGTTGTCAGGACGCTTATCGGCATATGGCTGTGAAGCCCCAGAACATGAGTCTGGGATTTATACTTTGAAGAGTGATGTCTACAGCTTTGGAGCAGTAATGTTAGAACTCTTGACAGGACGAAAGTCCTATGACAGCAAACGCAACCGAGGAGAAAAATTGCTGGTGAGATGGGCCATCCATCAGCTTCATGACATTGATGCTTTGTCAAGGATGGTTGATCCTTCATTGAATGGAGAATACCCTGCTAAATCTTTATCCCGCTTTGCTGACATTATCTCTCGGTGTGTTCAGGACGAGCCAGAATTCAGGCCACAAATGTCTGAAGTTGTGGACGACCTCATAGACATGATACAGAAAGAGGCTTCCAATAGATCAAATGGCGACTAA 2346 44.59 MGGKRSAIDCLNLEIYAQTFVGFVLIFAAQVLLGYTSPGDVTAINNLYAALGSPLLPGWVSTGGDPCADAWQGVSCNGSEINSIILNGANLGGELGDSLGTFASIKVIDLSNNQIGGSIPSSLPLTLQNFFLSANQFTGSIPTSLSSLSLLTDMSLNNNLLTGEIPDAFQALVGLINLDLSSNHLSGQLPPSMENLSSLTTLRLQINQLSGTLDVLQDLPLKDLNVENNLFSGTIPDKLLSIPNFRKDGNPFGNVTAPLLAPTSPLTLPSPPPPLSGPPSSNQPPVKPADGPSATEESNSGGKGKGLSTKRIVWISITVVLVFIILVLALVLLVKWCCGERQESDWISKRNETGAYKGSRLNLRDNGSLEQQVPKEAVGTPKEEHQEVVRRIGVAPKPQNEQDRNVERMFTIPKQDSHEIDISGLDVMMPPPPPPPPPPPPPPPPPPLVETVIVNPIVPVEVNAEKPSMKTLNPPISARSFTIASLQQYTNSFSQENLIGSGMLGTVYRAQLPGGKLLAVKKLDKKICNQQKDDEFFDLVNSIDGIRHANVVELMGYCAEHGERLLIYEYCSDGTLHDALHSDDEFKKKLSWSARVRMALGAARALQYLHEVCRPPIVHRNFKSANVLLDDELTVRVSDCGLAPLISRCSVSQLSGRLSAYGCEAPEHESGIYTLKSDVYSFGAVMLELLTGRKSYDSKRNRGEKLLVRWAIHQLHDIDALSRMVDPSLNGEYPAKSLSRFADIISRCVQDEPEFRPQMSEVVDDLIDMIQKEASNRSNGD* 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6779070 6789767 + Vvi12g488 Vvi12g488 773011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g488 781 Pfam Leucine rich repeat N-terminal domain 39 77 IPR013210 -
Vvi12g488 781 SUPERFAMILY Protein kinase-like (PK-like) 471 766 IPR011009 -
Vvi12g488 781 ProSiteProfiles Protein kinase domain profile. 493 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g488 781 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 25 779 - -
Vvi12g488 781 MobiDBLite consensus disorder prediction 358 384 - -
Vvi12g488 781 MobiDBLite consensus disorder prediction 264 286 - -
Vvi12g488 781 Pfam Protein tyrosine and serine/threonine kinase 496 766 IPR001245 GO:0004672|GO:0006468
Vvi12g488 781 PANTHER OS01G0253100 PROTEIN 25 779 IPR045271 GO:0004714|GO:0006468
Vvi12g488 781 Gene3D Transferase(Phosphotransferase) domain 1 572 780 - -
Vvi12g488 781 Gene3D Ribonuclease Inhibitor 40 254 IPR032675 -
Vvi12g488 781 Gene3D Phosphorylase Kinase; domain 1 460 570 - -
Vvi12g488 781 SUPERFAMILY L domain-like 36 244 - -
Vvi12g488 781 MobiDBLite consensus disorder prediction 427 447 - -
Vvi12g488 781 MobiDBLite consensus disorder prediction 263 306 - -
Vvi12g488 781 Pfam Leucine rich repeat 127 185 IPR001611 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76118 PF07714 PK_Tyr_Ser-Thr 5.70E-40 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g488 - - vvi:100248332 1417.14