Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g501 ATGAATGATCTCTTCTCAAGTTCGTTCAAAAGATTTACAGACCTCAAGCCGCAGTCCTTTGATGTTGAGGCTGGTGGGGATGCTGGAAGAGAGAGTGTCAATCTCGAAAAATTCTTCGAAGAAGTGGAGAATGTCAAGGATGATATGAGAGCTGTGGAAAATTTCTACAAGAAACTCCAAGATTTGAATGAAGAAAGCAAAACAGTCCACAATGCGAAGACCATGAAAGACCTTCGGGCCCGAATGGATACTGATGTTGTGCAGGTCTTGAAACGGGTTAAAATCATCAAGGGGAAGCTGGAGGCCCTTGAACGCTCCAACGCCGCTAACCGCAACCATCCAGGATGTGGCCCTGGGTCCTCCGCAGATCGAACCAGGACTTCTGTTGTTGGGGGACTGGGGAAGAAGCTCAAGGACATGATGGATGATTTTCAGAACTTAAGGGTCAGGATGAATGCTGAATACAAGGACACAATCGAGCGAAGGTACTTCACTATAACGGGGGAGAAAGCAGATGAAGAGACCATCGAGAACTTGATATCGAGCGGAGAAAGCGAAACCTTCCTTCAGAAGGCGATTCAGGATCAGGGCAGAGGCCAAATCATGGACACCATTTCTGAATTGCAGGAGAGGCATGGGGCGGTGAAGGAGATAGAGAAAAATCTGATAGAGCTTCACCAAGTGTTCCTAGATATGGCCGCACTGGTAGAGGCGCAGGGGCAGCACCTGAACGACATCGAAAGCCATGTAGCCCATGCCAGTTCCTTCGTCAGAAAAGGCACCGATCAGCTCCAGATTGCGAGGAACTACCAGAAGAGCAGCAGGAAATGGACCTGCATCGCCGTTGGGCTAGCCATTTGTTTGATCATTGTCATCCTTTTCCCCGTCTTGAAGTCCCTTGATATGATTCACTTGTAG 918 48.47 MNDLFSSSFKRFTDLKPQSFDVEAGGDAGRESVNLEKFFEEVENVKDDMRAVENFYKKLQDLNEESKTVHNAKTMKDLRARMDTDVVQVLKRVKIIKGKLEALERSNAANRNHPGCGPGSSADRTRTSVVGGLGKKLKDMMDDFQNLRVRMNAEYKDTIERRYFTITGEKADEETIENLISSGESETFLQKAIQDQGRGQIMDTISELQERHGAVKEIEKNLIELHQVFLDMAALVEAQGQHLNDIESHVAHASSFVRKGTDQLQIARNYQKSSRKWTCIAVGLAICLIIVILFPVLKSLDMIHL* 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6863292 6864210 - Vvi12g501 Vvi12g501 773024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g501 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Vvi12g501 305 Coils Coil 42 65 - -
Vvi12g501 305 SMART tSNARE_6 200 267 IPR000727 -
Vvi12g501 305 CDD SNARE_syntaxin1-like 204 265 - -
Vvi12g501 305 MobiDBLite consensus disorder prediction 108 127 - -
Vvi12g501 305 SMART SynN_4 30 156 IPR006011 GO:0016020
Vvi12g501 305 Pfam SNARE domain 243 293 IPR000727 -
Vvi12g501 305 Gene3D - 198 298 - -
Vvi12g501 305 Gene3D - 35 162 - -
Vvi12g501 305 SUPERFAMILY t-snare proteins 34 260 IPR010989 GO:0016020|GO:0016192
Vvi12g501 305 PANTHER SYNTAXIN 18 298 IPR045242 -
Vvi12g501 305 PANTHER T-SNARE-RELATED 18 298 - -
Vvi12g501 305 CDD SynN 35 192 IPR006011 GO:0016020
Vvi12g501 305 Pfam Syntaxin 37 240 IPR006011 GO:0016020
Vvi12g501 305 ProSitePatterns Syntaxin / epimorphin family signature. 211 250 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g501 K08486 - vvi:100241360 598.971