Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g517 ATGGGGGATGCAAAGTGTAGTGTGTTCATGGGCTGTATTGCTGCATTTCAGGTACTTGAGAGACAAGTACTGGCTATAATTGGGCCACAGTCCTCCTCAATAGCTCATATGATTTCTCAGATTGCTAACGGTCTCCAAGTGCCTCAAATCTCATATGCTGCCACTGATCCGACTCTCTCTGCCCTCCAATTTCCTTTCTTTCTTCGTACCACACATAGTGACTCGTATCAAATGGCTGCAATGGCTGATTTGATTGACTATTATGGGTGGAAGGAAGTTATTGTAATTTTTGTGGATGATGATTATGGGAGGAATGGAATGGCTGCTTTAGACGATGAGCTTGAGAAAAGAGGGTCAAAGATTTCTTACAAGTTGCCTTTGCCTACTGAATTCAATGTCAGGGACTTCACTGAAATGCTCAATAAGTCCAAATTGATTGGACCTCGAGTTTATGTTGTTCATGTTAACCCTGATCCCAGTTTTAGAATCTTTTCCATAGCTCAAAAACTTCAAATGATGACCCGTGGCTATGTTTGGTTTGCAACAGATTGGCTTTGTGCTACTTTAGATTCATTCTCACCAATGAATCAAACTTCACTCCGTTTCCTCCAAGGGGTAGTTGGACTTCGTCAACATATTCCACAATCCAGGAAGAAGGATGCTTTTGTGTCCCAGTGGAGAAAAATGCAGAAAAAAGGGTTAGTAAGTTCTGGATTGAATACGTATGGACTTTATGCTTATGACACTGTGTGGGCGGTTGCATATGCAATTGATAAGTTTTTAAAGGAAAATGGCAATATGTCATTTTCTGAAAGTGATAAGTTACATGATATGAGAGCAACTCAGTTTGGGAAGCTAGAAGTTTTTGAGAATGGAAATTTTTTGCGTGAACAATTACTGCAGATAAATTTCACTGGTTTAACAGGTCGGATTCAATTTGATCCAGAAAGGAATGTCATGAATGGTAGTTATGATGTCATTAATATTGTCCACACAGAAATTCGTGGGGTTGGTTATTGGTCTAATTATTCAGGTCTCTCAGTGCTACCCCCAGAAGATCTCAAAGGTGAACAAAATAGGAATTCCCTTCTAGATCAGAAGCTTCGCATTGTTACCTGGCCTGGTGGAATCACAGAAAAACCACGTGGTTGGGAGATTGCTGCCAATGAAAGACCGTTGAGACTCGGGATTCCAAAAAGAACCAGTTTTGTTGATTTTGTAACAGAATTGAACACCAGTCACAAAGTCCAAGGATACTGTATTGATGTGTTTAATGCAGCACTGAAGCTAGTCCCATATAATGTTCCACACACATTCATACCATTTGGGGATGGTCGGTCCAATCCTCATTATGATGAGCTTGTGCAAAAGGTTGCCGATGATGTGTTTGATGGAGTTGTCGGGGACGTTGCAATTGTTACAAATCGGACAAGGATTGTGGACTTCACTCAGCCTTACGCTGCGACTGGTCTTGTCATAGTAGCTCCTGTCCATAACACAAAATTAAGTGCATGGGTCTTTCTTAAACCATTTACAGTTGAGATGTGGTGTGTCACTGCAGCTGCTTTTGTGATGATTGCTGTGGTAATTTGGATTCTTGAGCATCGTGTCAATGACGATTTTAGGGGTCCTCCTAAGAGGCAGCTCATCACAATGTTCCTGTTCAGCTTTTCAACACTATTCAAGACAAACCAAGAAGATACCAGAAGCACATTAGGACGGATAGTGATGGTGGTGTGGCTTTTCTTATTGATGGTAATCACATCAAGTTATACAGCTAGCTTGACTTCAATCCTTACGGTCCAGCAACTTTCATCACCCATCACAGGAATTGACAGCTTGATCGCAAGTGACTTGCCTATCGGTTATCAAGTAGGGTCATTTGCCTTCAGCTATCTGAGGGACAGTCTTTACGTACACCAATCAAGACTTGTTTCTCTAGGCTCCCCAGAAGCATATGAAATGGCATTGCGAAAAGGGCCAAAAGGTGGAGGGGTGGCTGCTATTGTAGATGAGCTTCCATATGTGGAGCTTTTTCTAGAAAAGCAGAAGGATTTTGGGGTTTTTGGGCAAACATTCACCAAGAGCGGCTGGGGATTTGCTTTTCAAAAAGACTCTCCACTTGCCGCTGACCTATCAACTGCAATCCTGAGACTTTCTGAGACTGGAACACTTCAGAAGATCCATGAGAATTGGTTTTGTAAGATGGGTTGTCCTGGATGGAGGAGACGGAAGTCTGAACCTAACCAACTCCATATGATCAGCTTCTGGGGTCTATATCTTTTATGTGGTTCTATTACACTTATTGCACTCCTAGTGTTTCTGCTACGAACCATTCGCCAGTTTGCCCGGTACAAAAGGAAGAAGCCAATACAGATAGGCGATTCTCCCTCGGTGTCATCAAATACCCGCTGTTCCCAGGTCATTTACAACTTCTTTGACTTCATAGATGAGAAGGAAGAAGCCATCAAGAAAATGTTCAAGCAGCAAGAGAATCCCCAGCCTCAGGTGAGCTAA 2517 42.31 MGDAKCSVFMGCIAAFQVLERQVLAIIGPQSSSIAHMISQIANGLQVPQISYAATDPTLSALQFPFFLRTTHSDSYQMAAMADLIDYYGWKEVIVIFVDDDYGRNGMAALDDELEKRGSKISYKLPLPTEFNVRDFTEMLNKSKLIGPRVYVVHVNPDPSFRIFSIAQKLQMMTRGYVWFATDWLCATLDSFSPMNQTSLRFLQGVVGLRQHIPQSRKKDAFVSQWRKMQKKGLVSSGLNTYGLYAYDTVWAVAYAIDKFLKENGNMSFSESDKLHDMRATQFGKLEVFENGNFLREQLLQINFTGLTGRIQFDPERNVMNGSYDVINIVHTEIRGVGYWSNYSGLSVLPPEDLKGEQNRNSLLDQKLRIVTWPGGITEKPRGWEIAANERPLRLGIPKRTSFVDFVTELNTSHKVQGYCIDVFNAALKLVPYNVPHTFIPFGDGRSNPHYDELVQKVADDVFDGVVGDVAIVTNRTRIVDFTQPYAATGLVIVAPVHNTKLSAWVFLKPFTVEMWCVTAAAFVMIAVVIWILEHRVNDDFRGPPKRQLITMFLFSFSTLFKTNQEDTRSTLGRIVMVVWLFLLMVITSSYTASLTSILTVQQLSSPITGIDSLIASDLPIGYQVGSFAFSYLRDSLYVHQSRLVSLGSPEAYEMALRKGPKGGGVAAIVDELPYVELFLEKQKDFGVFGQTFTKSGWGFAFQKDSPLAADLSTAILRLSETGTLQKIHENWFCKMGCPGWRRRKSEPNQLHMISFWGLYLLCGSITLIALLVFLLRTIRQFARYKRKKPIQIGDSPSVSSNTRCSQVIYNFFDFIDEKEEAIKKMFKQQENPQPQVS* 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7056922 7062674 + Vvi12g517 Vvi12g517 773040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g517 838 Gene3D - 6 321 - -
Vvi12g517 838 SUPERFAMILY Periplasmic binding protein-like I 3 384 IPR028082 -
Vvi12g517 838 SMART GluR_14 394 735 IPR001320 GO:0015276|GO:0016020
Vvi12g517 838 Pfam Receptor family ligand binding region 3 330 IPR001828 -
Vvi12g517 838 SUPERFAMILY Periplasmic binding protein-like II 369 733 - -
Vvi12g517 838 CDD PBP1_GABAb_receptor_plant 1 348 IPR044440 -
Vvi12g517 838 Gene3D - 73 346 - -
Vvi12g517 838 PRINTS Metabotropic glutamate GPCR signature 26 52 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vvi12g517 838 PRINTS Metabotropic glutamate GPCR signature 58 77 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vvi12g517 838 PRINTS Metabotropic glutamate GPCR signature 77 93 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vvi12g517 838 PRINTS Metabotropic glutamate GPCR signature 93 110 IPR000337 GO:0004930|GO:0007186|GO:0016021
Vvi12g517 838 Pfam Ligand-gated ion channel 734 764 IPR001320 GO:0015276|GO:0016020
Vvi12g517 838 CDD GluR_Plant 391 733 - -
Vvi12g517 838 Gene3D - 386 504 - -
Vvi12g517 838 PIRSF IGluLR_plant 1 838 IPR017103 -
Vvi12g517 838 Pfam Bacterial extracellular solute-binding proteins, family 3 411 733 IPR001638 -
Vvi12g517 838 PANTHER GLUTAMATE RECEPTOR 3.7 2 836 - -
Vvi12g517 838 Gene3D - 505 634 - -
Vvi12g517 838 Gene3D - 635 736 - -
Vvi12g517 838 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 2 836 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g517 K05387 - vvi:100255191 1677.53