Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g518 ATGGAAGTGAACTTGACTGCTGGGTCTGGTCGGGTTTTCATGGCAGGAGTGCTGCTGCTGATTTTTTGTATTTGGGTGCCCATACTGGGTAGGGCTCAAAATGCCAGTGTTTCTTCTTCAGCTGCAAATGTTGTGAATATTGGTGCCGTGTTTACTTTGAATTCATTCATTGGAAGAGCGGCACAGCCGGCGATTTTAGCTGCAATTGATGATGTTAACTCTGATTCGAGCATTCTTGAAGGGAGGAAACTGAACGTTATTTTTCAGGATACAAATTGCAGTGGATTTCTTGGAACAGTGGAAGCATTGCAGCTGATGGAGAAAGATGTGGTTGCCATAATCGGCCCACAATCATCTGGAATAGCTCATGTTATGTCCCATGTCGTAAATGAATTTCACATACCACTTCTGTCCTTTGGGGCGACAGATCCCACCCTCTCTGCACTGCAGTTCCCGTATTTCCTCCGCACTACACAGAGTGACTATTACCAAATGTATGCAATTGCTGATTTGGTTGATTTTTTTGAATGGAGAGAAGTAATTGCAATTTTTGTAGATGATGATTATGGAAGAAATGGGATTTCAGTATTGGGTGATGCCCTTGCTAAGAAGCGTGCCAAGATTTCTTATAAGGCTGCCTTCACACCTGGAGCCACCAAGAATGAAATCAGTGACTTGTTGGCTGGAGTGAACCTAATGGAATCTCGAGTTTTCGTTGTACATGTTAATCCTGACTCTGGCCTGTATATTTTCTCTGTTGCAAAGGTTCTTGGAATGTTGAACAATGGTTATGTTTGGATTGCCACAGACTGGCTTCCTTCTGTTTTAGATTCATCAGAAACGGTTGATCCTGATCAAATGAATCAATTACAAGGAGTTGTTGCACTTCGCCATCACATCCCTGATTCTGATCGCAAAAAGAGTTTTACATCTAGGTGGAACAAGTTGAAGAACAAGGGGATTTCCGGCCTGAACTCTTATGCTTTCTATGCTTATGATTCTGTTTCATTAGTTGCACATGCTCTTGATGTTTTTTTCAAAGAAGGTGGAAATATTTCTTTCTCTAGTGACCCAAAGTTGCACGACACAAATGGAAGCAAACTACAATTATCTACACTCCATACTTTTGATGGTGGCCAGAAATTACTCCAAACCCTAATTACAACAAACTTTACAGGTCTGAGTGGTCAGATTCAATTTGATTTGGAGAAGAATCTAATTCACCCAGCATATGATGTTCTCAACATTGGTGGAACTGGATTCCGCAGAATAGGTTATTGGTCAAATTATTCTGGTCTCTCAGTCATCACTCCAGAAATCTTATATACGAGGCCTCCAAACACTTCTTCTAGCAATCATCATCTTTACAGTGTTATATGGCCTGGTGAAATTACAGCAAAGCCTCGGGGATGGGTGTTCCCTAATAATGGGAAGCCACTGCGAATTGGGGTGCCTGACCGAGTAAGTTTTAAAGATTTTGTGGCGAGAGACAAGGGGCCCCTTGGGGTCAGAGGATATTGCATTGATATCTTTGAAGCTGCAGTAAACTTGCTGCCTTACGCAGTTCCACACACATATATGCTATATGGCAATGGTTTGAGAAATCCTAGCTACGATGATCTTGTGTCTCAGGTTGTGGGAAATAAATTTGATGCTGCTGTTGGGGACATCACAATTGTTACAAATAGAACAAGGATAGTGGATTTTACCCAGCCTTTCATGGAATCTGGACTCGTCATAGTTGCTACGGTGAAAGAGACAAAATCTAGCCCTTGGGCTTTCCTCAAGCCATTCACCGTGCAAATGTGGTGTGTTACTGGTGCCTTCTTTATTTTTGTAGGAGCAGTTGTTTGGATTCTTGAGCATCGTATAAATCAAGAATTCCGTGGTCCACCAAGCCAGCAACTCATTACCATCTTTTGGTTCAGTTTCTCCACAATGTTTTTCTCACACAGAGAGAACACAGTGAGCACCCTTGGACGTCTGGTGCTGATCATATGGTTATTTGTAGTGTTAATCATCAACTCAAGCTACACAGCTAGTTTGACATCAATCCTCACAGTACAGCAGCTGACATCACGGATTGAAGGAATTGATAGCTTGATCTCGAGTAATGATAAAATTGGAGTTCAAGATGGGTCCTTTGCATGGAATTATTTGATTGAAGAGCTCAACATACCAGTGTCTAGGCTTGTCCATTTAAAAGATCAGGAGGAATATGCTGATGCCCTCCGGTTGGGACCAAAAGAAGGTGGGGTAGCTGCCATTGTTGATGAGCTTCCTTACATTCAGGTCTTCTTGGCCAAACTGAACTGCGCCTTCAGGATTGTTGGACAGGAGTTTACAAAAAGTGGGTGGGGATTCGCATTCCAAAGGGATTCTCCTCTTGCAGTTGACTTGTCAACCGCCATTCTTCAGCTCTCAGAGAATGGTGAACTCCAAAGAATCCATGATAAATGGCTATCAAATAAGGAGTGCTCCTCGCAACTCAGCCAAGTTGATGAAAACCGACTCTCACTCTCAAGCTTCTGGGGCCTATTTCTCATTTCTGGCATTGCATGCTTTGTAGCTCTCACCGTATTCTTCTTTAGGACCTTTTGTCAATACCGCAGATATGGCCCAGAGGAGAAGGAGGAGGATGACAACGAGATTGATAGTCCAAGGCGGCCTCCCCGCCCTGGCTGCCTGGTTTTTATTGACAAGAAAGAAGAAGAGATCAAGGAGGCTCTTAAGCGGAAGGATTCAAAGCAACGGGTTCATAGGAAAAAGGCAGTTGAATCTATAAATTTATATAGAAAAATTCTAAATATTACCCACAACGCTTTGAAATATGAGCTCTCAAAGCGCTTTCTGCCGTTTCCATGGCCATTACTCTTCTCCAAGGCCATCCTTAGTATGATTAAACTTTCCCGGAAAGTTTTTTACGTCAAACTCAGACGTAGACTCCTATGTCGCGTTTCCCTCCTCGGCCGATGCCTCATGCGCCTCTGGGATCGATTTCTCCTCATTTCTAGGCCCAAATCCATTAAGTATAAACAGTTGCTGAGAGCAACTACCTTTGCTGCTAAGCCTGTTCCTTCTGCTACCACTCCTGCTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCAGCTCTGCAGTCTTCAGGGGAGGCTGGTTTTGCAAGGTGTCGTGAGCGTGATAAGGACTCGGATTTGGTTGCTTTGAAGATCAGTCTTCTGGGTGATTGCCAGATTGGAAAAACAAGTTTTGTGATTAAGTATGTAGGAAACGAGAAAGAACAAGGAGACATTCAGACGTCAGGGATAAATTTGATGGACAAAACTCTTTATGTTGGAGGTGCAAGGATTTCTTATAGTATCTGGGAAGTAGGAGGTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAGCAATCCTGTACATGTTTGATCTTACTAGCAGGTGTACCTTGAATAGTGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAGAATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAGGCAAGAGCGTACGCTAAGGCCCTAAATGCAACGCTCTTCTTCTCGAGCGCAACCTACAACATAAACGTGAACAAGATCTTCAAATTCATCACAGCAAAACTCTTCAACTTGCCATGGACTGTGGAGAGAAATCTGACAGTTGGAGAGCCCATGATCGATTTCTAG 3768 43.29 MEVNLTAGSGRVFMAGVLLLIFCIWVPILGRAQNASVSSSAANVVNIGAVFTLNSFIGRAAQPAILAAIDDVNSDSSILEGRKLNVIFQDTNCSGFLGTVEALQLMEKDVVAIIGPQSSGIAHVMSHVVNEFHIPLLSFGATDPTLSALQFPYFLRTTQSDYYQMYAIADLVDFFEWREVIAIFVDDDYGRNGISVLGDALAKKRAKISYKAAFTPGATKNEISDLLAGVNLMESRVFVVHVNPDSGLYIFSVAKVLGMLNNGYVWIATDWLPSVLDSSETVDPDQMNQLQGVVALRHHIPDSDRKKSFTSRWNKLKNKGISGLNSYAFYAYDSVSLVAHALDVFFKEGGNISFSSDPKLHDTNGSKLQLSTLHTFDGGQKLLQTLITTNFTGLSGQIQFDLEKNLIHPAYDVLNIGGTGFRRIGYWSNYSGLSVITPEILYTRPPNTSSSNHHLYSVIWPGEITAKPRGWVFPNNGKPLRIGVPDRVSFKDFVARDKGPLGVRGYCIDIFEAAVNLLPYAVPHTYMLYGNGLRNPSYDDLVSQVVGNKFDAAVGDITIVTNRTRIVDFTQPFMESGLVIVATVKETKSSPWAFLKPFTVQMWCVTGAFFIFVGAVVWILEHRINQEFRGPPSQQLITIFWFSFSTMFFSHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSRIEGIDSLISSNDKIGVQDGSFAWNYLIEELNIPVSRLVHLKDQEEYADALRLGPKEGGVAAIVDELPYIQVFLAKLNCAFRIVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGELQRIHDKWLSNKECSSQLSQVDENRLSLSSFWGLFLISGIACFVALTVFFFRTFCQYRRYGPEEKEEDDNEIDSPRRPPRPGCLVFIDKKEEEIKEALKRKDSKQRVHRKKAVESINLYRKILNITHNALKYELSKRFLPFPWPLLFSKAILSMIKLSRKVFYVKLRRRLLCRVSLLGRCLMRLWDRFLLISRPKSIKYKQLLRATTFAAKPVPSATTPAFPPPPPPPPPLPPPALQSSGEAGFARCRERDKDSDLVALKISLLGDCQIGKTSFVIKYVGNEKEQGDIQTSGINLMDKTLYVGGARISYSIWEVGGDEKAHNHIPMACKDSVAILYMFDLTSRCTLNSVISWYHQARKWNQNAIPVLIGTKFDDFIQLPIDLQWTVASQARAYAKALNATLFFSSATYNINVNKIFKFITAKLFNLPWTVERNLTVGEPMIDF* 1256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7066943 7076302 + Vvi12g518 Vvi12g518 773041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g518 1255 Gene3D - 160 433 - -
Vvi12g518 1255 Gene3D - 591 717 - -
Vvi12g518 1255 Coils Coil 899 919 - -
Vvi12g518 1255 SUPERFAMILY Periplasmic binding protein-like II 455 823 - -
Vvi12g518 1255 Pfam Ligand-gated ion channel 823 854 IPR001320 GO:0015276|GO:0016020
Vvi12g518 1255 Gene3D - 1059 1246 IPR027417 -
Vvi12g518 1255 Pfam Receptor family ligand binding region 61 417 IPR001828 -
Vvi12g518 1255 Pfam Bacterial extracellular solute-binding proteins, family 3 537 822 IPR001638 -
Vvi12g518 1255 PANTHER GLUTAMATE RECEPTOR 3.4 35 912 - -
Vvi12g518 1255 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Vvi12g518 1255 Gene3D - 475 590 - -
Vvi12g518 1255 CDD Spg1 1071 1252 IPR017231 -
Vvi12g518 1255 Gene3D - 64 408 - -
Vvi12g518 1255 CDD PBP1_GABAb_receptor_plant 46 435 IPR044440 -
Vvi12g518 1255 MobiDBLite consensus disorder prediction 1028 1048 - -
Vvi12g518 1255 ProSiteProfiles small GTPase Rab1 family profile. 1063 1255 - -
Vvi12g518 1255 Pfam Ras family 1072 1235 IPR001806 GO:0003924|GO:0005525
Vvi12g518 1255 SUPERFAMILY Periplasmic binding protein-like I 40 472 IPR028082 -
Vvi12g518 1255 MobiDBLite consensus disorder prediction 1026 1054 - -
Vvi12g518 1255 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 912 - -
Vvi12g518 1255 CDD GluR_Plant 478 821 - -
Vvi12g518 1255 Gene3D - 718 825 - -
Vvi12g518 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1071 1246 IPR027417 -
Vvi12g518 1255 SMART rab_sub_5 1071 1238 - -
Vvi12g518 1255 PRINTS Transforming protein P21 ras signature 1071 1092 - -
Vvi12g518 1255 PRINTS Transforming protein P21 ras signature 1112 1134 - -
Vvi12g518 1255 PRINTS Transforming protein P21 ras signature 1173 1186 - -
Vvi12g518 1255 PRINTS Transforming protein P21 ras signature 1213 1235 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g518 K05387 - vvi:100250030 1825.06