Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g521 ATGCCGGCAGGAATTATGATTCCGGCGACCCATATGCCGTCAATGATGGGAAGAAATGGGAATGTTGCTGCTTATGGATCTTCCTCAGGACTCAGTCTTGGCCAGCCAAATATGATGGACGGCCAGCTTCACCCACTCGACATGACTCAAAACACATCGGAAAGTGAAATCGCCAGGCTCAGAGAGGATGATTTTGACAGCAAATCTGGCAGTGAAAACCATGAAGGTGCCTCCGGAGATGACCAAGATCCCAACCAACGCCCCAAGAAGAAGCGCTACCATCGCCACACTCAGCATCAGATCCAGGAAATGGAAGCTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGCTGAGCCGTGAATTAGGGTTAGAGCCCTTGCAGGTCAAATTTTGGTTCCAAAACAAGCGCACCCAGATGAAGACCCAGCATGAGCGCCATGAGAACACACAGCTTCGCAGCGAGAATGAAAAGCTCCGTACAGAGAATTTGAGGTACCGGGAAGCTCTGAGCAACGCTTCCTGTCCTAATTGCGGAGGCCCGACTGCTATAGGAGAGATGTCATTTGATGAACATCATCTGAGATTGGAGAATGCTAGGTTGAGGGAAGAGATTGATCGGATCTCGGCAATTGCTGCAAAGTATGTTGGCAAACCAGTAGTGAACTATCCTCTTATTCCTCAGGTTCCCACCCGTCCCCTCGATCTAGGGGTTGGAAACTTTGGGGCACAGCCAGGATTAGGAGGCGAGCTGTTTGGAGCCAGTGACCTTCTTAGGTCAATCAATGGACCGACTGAAGCTGACAAACCAATGATAATTGAGCTTGCAGTTGCAGCTATGGAGGAGCTATTCCGAATGGCTCAGATGGGGGAACCCTTGTGGCTTCCAAGCCTTGATGGCACAACCACCGAACTAAGCGAAGATGAATATATCAGGTCATTCCCAAGGGGAATTGGACCAAAACCTCCAGGATTTAAGTGTGAAGCCTCGCGAGAAACCGCTGTCGTTATCATGAACCATATTAGCCTGGTTGAGATTCTCATGGATGTGAACCAGTGGTCTACCGTGTTTTCCGGCATTGTTTCAAGAGCTATGACCCTGGAAGTACTATCAACTGGAGTTGCAGGGAACTATAACGGAGCCTTTCAAGTGATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGGTTGACGTTTCCTTGGACAATTTACGTCCTAGTCCGGTGGTGAGATGTCGAAGAAGGCCATCTGGATGTTTAATACAAGAAATGCCTAATGGATATTCAAAGGTTACATGGGTTGAGCATGTTGAAGTTGATGATCGAGGTGTTCATAATATATATAAGCAGTTAGTTAACTCTGGTCTTGCATTTGGGGCGAAAAGATGGGTCGCTACTTTAGACCGCCAATGCGAGCGTCTTGCAAGTGCCATGGCAACAAACATTCCTACGGGTGAAGTTGGTGTGATAACAAGTCAAGAAGGGAGAAAAAGTATGTTGAAGCTGGCTGAAAGAATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCCTCTACAGCCCACACATGGACGACCCTATCTGGAAGTGGCGCTGATGATGTTAGGGTTATGACCCGGAAGAGCGTGGACGATCCAGGCAGGCCTCCTGGGATTGTGCTAAGTGCTGCTACTTCATTCTGGCTTCCAGTTCCGCCAAAGAGAGTATTTGATTTTCTCCGTGATGAGAATTCTCGCAGCGAGTGGGATATTCTCTCAAATGGTGGGGTTGTTCAAGAAATGGCACATATAGCGAATGGTCAAGACACAGGCAACTGTGTATCTCTGTTACGGGTAAATAGTGCAAATTCAAGCCAGAGCAACATGTTGATATTGCAAGAAAGCTGTACTGATTCAACAGCCTCTTTCGTGATTTATGCTCCTGTCGATGTTGTTGCCATGAACATGGTACTGAATGGAGGGGATCCAGACTATGTTGCTCTTCTTCCCTCAGGATTTGCAATTCTTCCAGATGGAACCACAGCTCATGGAGGAGTCATAGGTGAAGTTGGGTCTGGAGGATCTCTTCTAACCGTGGCATTTCAGATATTGGTTGATTCGGTTCCAACGGCAAAACTCTCTCTAGGGTCGGTTGCGACTGTTAACAATCTCATCGCTTGCACTGTCGACAGGATTAAGGCTGCAGTCTCGTGTGAGAACGCATGA 2274 47.8 MPAGIMIPATHMPSMMGRNGNVAAYGSSSGLSLGQPNMMDGQLHPLDMTQNTSESEIARLREDDFDSKSGSENHEGASGDDQDPNQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRSENEKLRTENLRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLIPQVPTRPLDLGVGNFGAQPGLGGELFGASDLLRSINGPTEADKPMIIELAVAAMEELFRMAQMGEPLWLPSLDGTTTELSEDEYIRSFPRGIGPKPPGFKCEASRETAVVIMNHISLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGAFQVMTAEFQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPVVRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNIYKQLVNSGLAFGAKRWVATLDRQCERLASAMATNIPTGEVGVITSQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGSGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQSNMLILQESCTDSTASFVIYAPVDVVAMNMVLNGGDPDYVALLPSGFAILPDGTTAHGGVIGEVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVDRIKAAVSCENA* 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7101001 7106874 - Vvi12g521 Vvi12g521 773044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g521 757 Gene3D - 324 503 IPR023393 -
Vvi12g521 757 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Vvi12g521 757 SMART HOX_1 88 151 IPR001356 GO:0003677
Vvi12g521 757 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Vvi12g521 757 Coils Coil 146 173 - -
Vvi12g521 757 MobiDBLite consensus disorder prediction 64 88 - -
Vvi12g521 757 CDD homeodomain 90 148 IPR001356 GO:0003677
Vvi12g521 757 SUPERFAMILY Bet v1-like 518 749 - -
Vvi12g521 757 SUPERFAMILY Bet v1-like 269 500 - -
Vvi12g521 757 SMART START_1 278 498 IPR002913 GO:0008289
Vvi12g521 757 CDD START_ArGLABRA2_like 273 497 - -
Vvi12g521 757 Pfam START domain 279 498 IPR002913 GO:0008289
Vvi12g521 757 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Vvi12g521 757 SUPERFAMILY Homeodomain-like 76 147 IPR009057 -
Vvi12g521 757 ProSiteProfiles START domain profile. 269 501 IPR002913 GO:0008289
Vvi12g521 757 Gene3D - 76 164 - -
Vvi12g521 757 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 46 754 IPR042160 -
Vvi12g521 757 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 46 754 - -
Vvi12g521 757 MobiDBLite consensus disorder prediction 64 99 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g521 Vvi19g464 ECH
Vvi10g26 Vvi12g521 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13811 PF01852 START 1.10E-58 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g521 K09338 - vvi:100261842 1442.17