Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g523 ATGCAGTTTTTGCATTTCTCCTTTTCCCCCCTTTTAGAAGATGAAATCATAACAATTACAAGACAGGAACATCAAGTGATCCATTGGTATAGCATATTTGTGCTTCTAACTCATCATACATTTGAACTTACTTGTCGTTTTGGTGTTCCAAATAGTATAATGGCCGGCCATCATAGTAACATCAACATATCAAAACTGTTCCCAATATCACATAATCCTCTCGTCGTCTCCCTTTTAGGCTCTCTTTCTTGTTCTTTCTTCCCTAAACCTCTCTGTAATTTCATCAAGATGAACGACCTGCTCACGGATTCATTTGTTGGAGATGCCAAAGTTCAGCCTCCCAAAGAAAGAGACATCGAAATGGGAACCCGGGTTCTGAGGACTAACTCAGATTTGGGATTGGAAGCTTTCAATAAGCAGATACAAGAGGTTGAGAAGCAGGTGGATAAGCTCACATTCTTACTCAAGAAACTTAAGGATGCTAACGAGGAGTCGAAGTCTGTTACCAAAGCGTCTGCCATGAAAGAAATCAAGAAGCGGTTGGAGAAAGATGTTGATGAAGTGGGAAAGATAGCACAAAATGTCAAAGCAAAACTAGAAGCAATAAACAGAGATAACTTAGCCAATCGAAAAAAGCCTGGCTGTGAAAAGGGAACAGGTGTTGATCGATCAAGGAAAAACATGACAAATGCATTGACAAAGAAGTTCAAGGACCTAATGATAGACTTTCAGGCCCTCAGACAAAAGATGCAAGATGAGTACCGCGAGGTTGTGGAGAGAAGGGTCATGACAGTTACTGGAACCAGACCAGATGAAGAGACAATAGACAACCTGATAGAAACTGGAAACAGCGAGCAAATCTTCCAGAAGGCAATTCAAGAGATGGGTAGAGGACAGGTGCTGGCCACACTGGAAGAAATTCAGGAAAGACATGACACTGTGAAGGAAATTGAGAAGAAGCTCCTTGACTTGCATCAGATTTACCTTGATATGGCTGTTCTAGTGGAAGCCCAAGGAGACCTGTTAAATAACATTGAAAACCAGGTGACAAATGCAGTGGACCATGTGCAATGGGGAACAGATGCTCTCAGAACAGCAAAGAGCTTGCAAAAGAAGTCAAGAAAATGCATGATGTTTGCCATCATCCTCATCTTGATTATTGCAGCCATTATCACTCTTTCTGTCCTGAAACCTTGGAAATAG 1203 41.48 MQFLHFSFSPLLEDEIITITRQEHQVIHWYSIFVLLTHHTFELTCRFGVPNSIMAGHHSNINISKLFPISHNPLVVSLLGSLSCSFFPKPLCNFIKMNDLLTDSFVGDAKVQPPKERDIEMGTRVLRTNSDLGLEAFNKQIQEVEKQVDKLTFLLKKLKDANEESKSVTKASAMKEIKKRLEKDVDEVGKIAQNVKAKLEAINRDNLANRKKPGCEKGTGVDRSRKNMTNALTKKFKDLMIDFQALRQKMQDEYREVVERRVMTVTGTRPDEETIDNLIETGNSEQIFQKAIQEMGRGQVLATLEEIQERHDTVKEIEKKLLDLHQIYLDMAVLVEAQGDLLNNIENQVTNAVDHVQWGTDALRTAKSLQKKSRKCMMFAIILILIIAAIITLSVLKPWK* 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7130380 7137097 + Vvi12g523 Vvi12g523 773046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g523 400 CDD SNARE_syntaxin1-like 303 365 - -
Vvi12g523 400 Pfam Syntaxin 137 339 IPR006011 GO:0016020
Vvi12g523 400 Coils Coil 134 164 - -
Vvi12g523 400 Coils Coil 178 198 - -
Vvi12g523 400 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 100 395 - -
Vvi12g523 400 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 304 366 IPR000727 -
Vvi12g523 400 PANTHER SYNTAXIN 100 395 IPR045242 -
Vvi12g523 400 SUPERFAMILY t-snare proteins 133 359 IPR010989 GO:0016020|GO:0016192
Vvi12g523 400 Gene3D - 130 258 - -
Vvi12g523 400 Gene3D - 295 397 - -
Vvi12g523 400 SMART SynN_4 129 255 IPR006011 GO:0016020
Vvi12g523 400 Pfam SNARE domain 341 391 IPR000727 -
Vvi12g523 400 SMART tSNARE_6 299 366 IPR000727 -
Vvi12g523 400 CDD SynN 134 291 IPR006011 GO:0016020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g523 K08486 - vvi:100251625 652.899