Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g526 ATGTCTGAACTCGACGCAAATATTCCAACCACTTTTGACCCTTTTGCTGATGCAAATGCTGAGGACTCGGGCGCGGGGACAAAAGAGTACGTCCATGTGCGTATCCAGCAGCGTAATGGGAGGAAAAGCCTGACTACCGTGCAAGGGTTGAAGAAGGAATTCAGCTACAACAAGATTCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAATGGCACTGTTGTCCAGGACCCTGAGCTAGGCCAGGTCATTCAACTTCAGGGTGATCAAAGGAAGAATGTTTCCACATTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAAAACATCAAGATCCATGGTTTTTGA 342 47.95 MSELDANIPTTFDPFADANAEDSGAGTKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF* 114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7162997 7166130 - Vvi12g526 Vvi12g526 773049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g526 113 Gene3D - 2 113 - -
Vvi12g526 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 8 113 IPR005874 GO:0003743
Vvi12g526 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Vvi12g526 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Vvi12g526 113 SUPERFAMILY eIF1-like 6 113 IPR036877 GO:0003743|GO:0006413
Vvi12g526 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Vvi12g526 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Vvi12g526 113 MobiDBLite consensus disorder prediction 1 23 - -
Vvi12g526 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Vvi12g526 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g526 Vvi19g454 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g526 K03113 - vvi:100243115 229.18