Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g551 ATGGAAGATATCACCGTTCCCGGCGGCGAATTTCCGGAACCGACGCCAGGAACCGGATTCTCCTGGCCCTCTCAAGCTCTCAAAAGTTCCTCTAGTGTAAGTTTGGAAGCTGATTGTTCATTTGGGGATTCAGATGGGCTAAAAGAACTTGGACCCCGAAAACGGTTGAAGCATGAATCATGTGGTGCAACTGGCACCAAAGCTTGCCGGGAAAAATTGCGGAGGGATAGGCTGAATGAGAGGTTCTTGGAATTGGGTTCTATCTTGGAGCCTGGAAGGCCACCCAAAACGGACAAGGCTGCTATTCTGAGTGATGCTGTTCGAATGGTGACTCAATTACGAAGTGAAGCACAGAAGCTGAAGGAGTCAAATGGGGATTTGCAAGAGAAGATTAAGGAATTGAAGGCTGAGAAAAATGAGCTTCGGGATGAGAAGCAAAGGTTAAAAGCCGAAAAGGAGAAGCTGGAGCAGCAAGTCAAAGCCATTAGTGCACAGCCAGGCTTTCTGCCTCATCCTTCTGCAATGCCAGCTGCATTTGCTGCCCAAGGCCGAGCACCTGGCAACAAGCTGATGCCTTTCATTGGTTACCCTAGTGTTGCCATGTGGCAATTCATGCCACCTGCTGCAGTTGACACATCACAGGATCATGTTCTCCGTCCCCCAGTGGCTTAA 672 49.55 MEDITVPGGEFPEPTPGTGFSWPSQALKSSSSVSLEADCSFGDSDGLKELGPRKRLKHESCGATGTKACREKLRRDRLNERFLELGSILEPGRPPKTDKAAILSDAVRMVTQLRSEAQKLKESNGDLQEKIKELKAEKNELRDEKQRLKAEKEKLEQQVKAISAQPGFLPHPSAMPAAFAAQGRAPGNKLMPFIGYPSVAMWQFMPPAAVDTSQDHVLRPPVA* 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7357659 7361079 - Vvi12g551 Vvi12g551 773074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g551 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 113 IPR011598 GO:0046983
Vvi12g551 223 CDD bZIP 128 160 - -
Vvi12g551 223 Gene3D arf6 gtpase in complex with a specific effector, jip4 112 165 - -
Vvi12g551 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 137 IPR036638 GO:0046983
Vvi12g551 223 MobiDBLite consensus disorder prediction 1 25 - -
Vvi12g551 223 Pfam Helix-loop-helix DNA-binding domain 66 113 IPR011598 GO:0046983
Vvi12g551 223 Gene3D - 54 111 IPR036638 GO:0046983
Vvi12g551 223 PANTHER BHLH TRANSCRIPTION FACTOR 2 223 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Vvi12g551 223 SMART finulus 68 119 IPR011598 GO:0046983
Vvi12g551 223 CDD bHLH_AtILR3_like 67 142 - -
Vvi12g551 223 PANTHER TRANSCRIPTION FACTOR ILR3 2 223 - -
Vvi12g551 223 Coils Coil 103 165 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g551 Vvi19g420 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13816 PF00010 HLH 9.30E-10 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g551 - - vvi:100251621 432.565