Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g553 ATGGGTGTGGGAAGAGCTGGTTTTTCAATTTGTTTTCTGATTCTGCTTTTTGTGTTGGTTGTGGGGAGCTCGGAGGCCAAGAGGAGGACGGCTAAGACCTTTTTTTCCAATAGAGCTTATGAGGTTGCTATGGAGATAGATGAGGACACGGCAGAACAGGTGTGGATTCAATGCAGGCAAGAACTGATGGAAATGAATTATGCTGTTGAGGAGTTTGATTTGTGTTTCATTGAGGAGGAAATGAGCGGCTCTAGTGAAATGAACCCGAAAGCAGCATTGTTGTTAAAAAGAAATGTGCACAAAGCTATCAATAGCTTGGCTCCCCAAATGAAAGAATCTCTTTTGGACTGTTTAAGAACAAAAAATCTTATCTTCAGCGTTTCAGGTGATGAGGTTCCCTCTAAGAGTTGGTTCATCAAGTACCTTGAGCTGCTCTTTGGTTGGTCTAATCGTTCCAGAAGACATTTGGCGAATGTGCCACAACTAACAATAGAGACATCCCCTGATTCAGCTCCAGGCCCAGATCAAGACCCTGCATTAGTAGATTCAGGGATTTATTATGGTCCTGCACCAGCTGCTAATTCAAAGTTGCCCCCTCTGGGACCACATCATCGAAAGAATACTGCTTCTGGTGAGGGAGATGATGTAACAGGTGAATCTGATGCTCCAAAAACCAAGTTAAAGCCCTTCTTCTGGGATAAGGTTCTTGCCAGCCCTGATGAGTCCATGGTCTGGCATGAGCTAAGTGCGGGATCATTCCAGTTCAATGAGGAGATGATAGAATCCCTATTTGGTTATACCAATGTGGAAAAGAACAAAAATGATAGCAAGAAAGAATCAGCATCCTCAGAACCCCAGTATATACAAATAATTAACCCAAAGAAAGCACAGAATTTATCAATTCTTCTACGAGCACTGAATGTGACAACAGAAGAAGTTTATGATGCCCTTAAGGAAGGCAATGAGCTTCCTGCAGAGCTCCTCCAAACTTTATTGAAGATGGCACCTACACCAGATGAAGAACTAAAGCTCAGGTTATTCTCTGGCAATACTTCTCAACTTGGCCCTGCAGAACGATTCCTCAAAGTTTTGGTTGAAATCCCATTTGCATTTAAGCGGATGGAAGCATTACTGTTCATGAGTTCTCTTCAGGAGGAAGTGTCTGGCATCAAAGAGTCATTTGCTGCTTTAGAGGTTGCTTGCAAGGAACTCAGAAACAGTAGGCTGTTCCTAAAGCTCTTGGAAGCAGTTCTGAAAACTGGAAACCGCATGAATGATGGTACTTTCCGTGGTGGAGCCCAGGCCTTCAAGCTTGACACACTCTTGAAGCTGTCTGATGTAAAAGGAATTGATGGCAAGACCACCCTCTTACACTTTGTTGTCCTGGAAATCATCCGGTCTGAAGGCATAAGAGCAGCCCGCGCAGCAAGGGAGAGCAAGAGCTTTTCCAGCTTGAAATCAGACGATTTAACTGAGGATCCCAGCAATGAGACAGAACACTTTCGCACCCTTGGTCTTCAGGTGGTCTCAGGCTTAAGTAATGAACTTGAGAACGTTAAAAAGGCAGCGATTATAGATGCTGATAGCTTAACCTCAACAGTGTCCAATCTAGGCGATTCACTGCTAAAAACCCGAGACTTTCTAAGAAAAGATATGAGGAAGGATGAGGGATTGCGTTTGTTTGCAATTGTTCGAGATTTCTTGAAAATTTTAGACAAGGTCTGCAATGAGGTGAGGAAATCAACCATAAAGCCAACAAAGAATCCAAAGACTGAGGCTCCAACAGTATCAGCTCACCCAGAAGTTCATCAGTCATCTTTGCAAGACATGCGCCAAAAACTATTTCCTGTGATTGCAGAACGGCGGATGGATAATAGTTCCAGTTCCAGTTCAGATGATGACAGCCCATCTTCTTAG 1917 43.56 MGVGRAGFSICFLILLFVLVVGSSEAKRRTAKTFFSNRAYEVAMEIDEDTAEQVWIQCRQELMEMNYAVEEFDLCFIEEEMSGSSEMNPKAALLLKRNVHKAINSLAPQMKESLLDCLRTKNLIFSVSGDEVPSKSWFIKYLELLFGWSNRSRRHLANVPQLTIETSPDSAPGPDQDPALVDSGIYYGPAPAANSKLPPLGPHHRKNTASGEGDDVTGESDAPKTKLKPFFWDKVLASPDESMVWHELSAGSFQFNEEMIESLFGYTNVEKNKNDSKKESASSEPQYIQIINPKKAQNLSILLRALNVTTEEVYDALKEGNELPAELLQTLLKMAPTPDEELKLRLFSGNTSQLGPAERFLKVLVEIPFAFKRMEALLFMSSLQEEVSGIKESFAALEVACKELRNSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGIDGKTTLLHFVVLEIIRSEGIRAARAARESKSFSSLKSDDLTEDPSNETEHFRTLGLQVVSGLSNELENVKKAAIIDADSLTSTVSNLGDSLLKTRDFLRKDMRKDEGLRLFAIVRDFLKILDKVCNEVRKSTIKPTKNPKTEAPTVSAHPEVHQSSLQDMRQKLFPVIAERRMDNSSSSSSDDDSPSS* 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7386024 7390581 + Vvi12g553 Vvi12g553 773076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g553 638 MobiDBLite consensus disorder prediction 207 222 - -
Vvi12g553 638 PANTHER FORMIN-LIKE PROTEIN 3 168 554 - -
Vvi12g553 638 PANTHER FORMIN-LIKE PROTEIN 3 5 191 - -
Vvi12g553 638 PANTHER FORMIN-LIKE PROTEIN 3 554 632 - -
Vvi12g553 638 MobiDBLite consensus disorder prediction 192 222 - -
Vvi12g553 638 Gene3D Formin, FH2 domain 218 583 IPR042201 -
Vvi12g553 638 ProSiteProfiles Formin homology-2 (FH2) domain profile. 217 597 IPR015425 -
Vvi12g553 638 SMART it6_source 217 629 IPR015425 -
Vvi12g553 638 PANTHER FORMIN-RELATED 168 554 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi12g553 638 PANTHER FORMIN-RELATED 554 632 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi12g553 638 PANTHER FORMIN-RELATED 5 191 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vvi12g553 638 MobiDBLite consensus disorder prediction 587 607 - -
Vvi12g553 638 MobiDBLite consensus disorder prediction 622 638 - -
Vvi12g553 638 Pfam Formin Homology 2 Domain 219 573 IPR015425 -
Vvi12g553 638 MobiDBLite consensus disorder prediction 583 607 - -
Vvi12g553 638 SUPERFAMILY Formin homology 2 domain (FH2 domain) 230 582 - -
Vvi12g553 638 MobiDBLite consensus disorder prediction 619 638 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g553 Vvi19g414 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g553 - - vvi:100258466 810.061