Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g580 ATGGATCTTCCGCTATTTTCTTTTCAAATTGTACCCGGCAGAATTGAGAAAATTGCAGAGCAATTCAAAGATGAGGATAAGGAAGGCATTGATGTACCATTTTTCGACTTAAAAGACATCCTGGCTGCTACGGATAACTTTTCAGATTCGCATAAGCTTGGACAAGGGGGCTTTGGGCCGGTTTACAAGGGCAAATTTCCAGATGGGAAGGAAGTAGTTGTGAAGAGACTCTCAAGTGCTTCAAGGCAAGGCCTAGTGGAATTTAAGAATGAGGTTGTGTTGATTGCCAAACTTCAGCATCGAAATCTGGTTAGACTTCTGGGCTATTGTATTGAAGGAGAAGAGAAAATTTTACTTTATGAATATATGCCCAACAAAAGCTTAGACTCCTTCATATTTGGTTTGCCTCTAAACCTACGTCAAGTCCCTACTTTTGTTGTATCATTGCATACGTGCTATGAACTGATAGACAGAATCTAA 480 40.0 MDLPLFSFQIVPGRIEKIAEQFKDEDKEGIDVPFFDLKDILAATDNFSDSHKLGQGGFGPVYKGKFPDGKEVVVKRLSSASRQGLVEFKNEVVLIAKLQHRNLVRLLGYCIEGEEKILLYEYMPNKSLDSFIFGLPLNLRQVPTFVVSLHTCYELIDRI* 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7794669 7795342 - Vvi12g580 Vvi12g580 773103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g580 159 ProSiteProfiles Protein kinase domain profile. 47 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g580 159 Pfam Protein tyrosine and serine/threonine kinase 50 132 IPR001245 GO:0004672|GO:0006468
Vvi12g580 159 SUPERFAMILY Protein kinase-like (PK-like) 32 145 IPR011009 -
Vvi12g580 159 PANTHER LECTIN PROTEIN KINASE FAMILY PROTEIN, PUTATIVE ISOFORM 2-RELATED 21 134 - -
Vvi12g580 159 Gene3D Phosphorylase Kinase; domain 1 13 122 - -
Vvi12g580 159 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 21 134 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g580 Vvi19g381 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76120 PF07714 PK_Tyr_Ser-Thr 8.70E-15 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g580 - - vvi:100267196 229.95