Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g581 ATGTTTGAATTGGTTGACCCAATCAATGAGATAGGCCATTTTTTTTGTGAATTAGGAACAACACCAGACATGGTTGTTGATAGAAAACATTGGGGATTAATTCAGCAGCAGCCTCTACCACAGCTCCAAGTGAAGAAGGGAAGTCTTAACTACCTAATGGTAATCAATAGAAGAAGAATTGCAATTACATGGTCAACAACAATTCACATGGTATCTACCATCTTCATCTTGTACCCAATATTGTTGTGTTGTTATCAAACATGTGCAGCAAGAGATACCATAAGGCAGAATGATCCGATCAGTGATGGTGATGGAGAAACTCTCTTGTCTGCTGGTAAGACATTTGAATTGGGGTTCTTCACCCCTAATGGGAGCTCTAGTCACCAAAGATATGTTGGTATATGGTATTACAGGTTGGAGCCGAAAACCGTTGTGTGGGTAGCCAATAGAAACGACCCACTGCCTGATTCCACTGGAGTTTTGTCCATTCAAGATGGTAACCTCGTGTTGAATTCGAATGGAAGAGGGAGACCTTTCTGGTCAACCCCTCTCCAGAAATCGTCATCTACAGAAAAGGTAGCGCAGCTCATAGATTCCGGGAACCTGGTTCTGAAGAATGATCAGCTGCAAACAAGTCTGTGGCAAAGCTTTGGAAACGCAACTGATACTTTTCTTCCAGGTATGAAGATGGATGGCAACTTGGTGTTGACTTCATGGAAAAGCAGCAGTGACCCGGGTTCGGGGAACTTCACTTTCAGGAAAGATCAAGTAGCACAGAACCTGTACATCATCCAGAATGGGCCTAATACATACTGGAAGAGTGGGATATCAGATGATTTCATTACATCCGGTTGGGACCATAAGATGTATTCTGAATTATCCAAAATGTTATCAAATTCCAGCATTAATAGTAGCCAACCAACAACCTCTTTTTATTATAGGAGGTTGGTGATGAAATTTTCCGGCCAGATAGAGTATCTACAGTTCCGTAATCAGACGGGCTCTTGGTATTCGCTTTTGAAGGAACCAAAAAACAGTTGCGATGGGAATAATCCCTGTGGGAGTTTTGCCAGCTGCAGTACTAGAAATAGGATTTTGTGCAGGTGTTTGCCAGGATTCCAACCAAATTTTCCAGCAAAGTGGAATGGTGGAGATTTTTCGGGGGGCTGTAGAAGAATTTCACCCCTGTGCAGCAAGAATGACACTTTTTTGAGGCTAGAGATGATGAGAGTGAAAAAATCAGACACACAGTTCAACACTACAAATGAAAAAGAATGCGAAAATTACTGCAACAGAGACTGTAACAACTGCCAGGCTTATGCCTATGTTGAAGCCGAGACTCGTGCAGACACTGCCATCTGTATGATTTGGGAGGAAAATCTTAATGACATTCAGGAGGCGTATTTGGATGGCGGCCATGATCTCTATGTGCGTGTGGCAGTTTCTGATATAGAACCGATGGGAAGAAATTGTAAGATTTGTGGAACTAATATTATCCCATATCCGCTAAGCACCGGAACTGACTGCGGTGATCCCAAGTACTTGAGTTTCTACTGTGAAAACTCCACAGGCCAAGTTATTTTTATGAGACCGAATAACACATATTACCAAGTCACTAGCATCAGGCCAGAAGCAAAAGAATTTTCCATTCAACTTGGTGAAGATAATTGTATAGCAAGTAGCGATGCCATGAAGAAACTTCTGGAGTTCAACCAGGACTCACCATTTTTGGTGAAAAGTGGGTGCACGGCAGAGAAGAGTACTTCTAGTTTGTATCCATTTTCTGATGCTGAATGGTTACGCGAAATACAGATTGAGTGGAGACCTCCATTGGAACCAATCTGTAATTCTACTGAAGACTGCAAGTACTGGGCTCATTCAAATTGCAATACAACAGGAGATGGACAGAAAAGGTGTCATTGCAAAATAAACTATCAGTGGGATCCCACAAATGTCAGTTGCTTTCCAGTAGAACACAGGGGAAGTATTCAAGGAAATCCAGTGCTTCATCTGTATCACAGTGAGAGACGCGTCAAAGACTTGATTGGCTGGGGCCAGTTCACAGAAGATGACAGGGAAGGCATAGATGTACCATTTTTTGATCTGGGAAGTATACTAGCTGCTACAAATAATTTGTCAGATGCAAATAAGCTAGGGCAAGGAGGTTTTGGCCCAGTATACAAGGGGAGCTTTCCAGGAGGACAAGACATTGCTGTGAAGAGGCTCTCAAGTGTTTCAGGACAAGGACTAGAAGAGTTCAAGAATGAGGTTGTGCTGATTGCCAAACTTCAGCATCGAAATCTTGTCAGACTTTTGGGCTATTACCGAACGCTTCGCTTCTTATTGAACTGGGAGAAACGCTTCGACATCATTTTGGGGATAGCTCGTGGGCTTCTTTATCTTCACCAAGATTCTAGGCTGAGGATCATTCACAGAGACCTGAAAACAAGCAACATTCTGCTGGATGAGGAGATGAATCCCAAAATTTCGGACTTTGGCTTGGCAAGGATTTTTGGGGGCAAACAAACTGAAGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCACTAGATGGCTTCTTTTCCATTAAATCCGATGTTTTCAGCTTCGGTGTTGTTGTACTCGAGATCATCAGCGGGAAAAGGAACACTGGATTTTATCAGTCTCAACAAGCTTTAAGCCTTCTGGGTTATGCATGGAGATTGTGGCAAGAGAACAAGGCATTGGACTTGATGGATCAGTCACTGCATGAAACATGTGATGTCGCTGAATTTTTGAGATGTGTAAATGTTGGGCTCCTCTGTGTTCAAGAAGACCCGAGCGATCGTCCTGTCATGTCGAATGTAGTTTTCTTGCTTGGCAGTGAAACTGCAACTCTTCCAACTCCTAAACAACCAGCTTTTACTGTGAGAAGAGGGGTTTTCAGCACAGCTTCTTCATCTAGTAAACCAGAGACATGTACCAATGAGTTAACAGTCAGTGTAGACGGCAGATAA 3015 42.82 MFELVDPINEIGHFFCELGTTPDMVVDRKHWGLIQQQPLPQLQVKKGSLNYLMVINRRRIAITWSTTIHMVSTIFILYPILLCCYQTCAARDTIRQNDPISDGDGETLLSAGKTFELGFFTPNGSSSHQRYVGIWYYRLEPKTVVWVANRNDPLPDSTGVLSIQDGNLVLNSNGRGRPFWSTPLQKSSSTEKVAQLIDSGNLVLKNDQLQTSLWQSFGNATDTFLPGMKMDGNLVLTSWKSSSDPGSGNFTFRKDQVAQNLYIIQNGPNTYWKSGISDDFITSGWDHKMYSELSKMLSNSSINSSQPTTSFYYRRLVMKFSGQIEYLQFRNQTGSWYSLLKEPKNSCDGNNPCGSFASCSTRNRILCRCLPGFQPNFPAKWNGGDFSGGCRRISPLCSKNDTFLRLEMMRVKKSDTQFNTTNEKECENYCNRDCNNCQAYAYVEAETRADTAICMIWEENLNDIQEAYLDGGHDLYVRVAVSDIEPMGRNCKICGTNIIPYPLSTGTDCGDPKYLSFYCENSTGQVIFMRPNNTYYQVTSIRPEAKEFSIQLGEDNCIASSDAMKKLLEFNQDSPFLVKSGCTAEKSTSSLYPFSDAEWLREIQIEWRPPLEPICNSTEDCKYWAHSNCNTTGDGQKRCHCKINYQWDPTNVSCFPVEHRGSIQGNPVLHLYHSERRVKDLIGWGQFTEDDREGIDVPFFDLGSILAATNNLSDANKLGQGGFGPVYKGSFPGGQDIAVKRLSSVSGQGLEEFKNEVVLIAKLQHRNLVRLLGYYRTLRFLLNWEKRFDIILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKQTEASTNRVVGTYGYMSPEYALDGFFSIKSDVFSFGVVVLEIISGKRNTGFYQSQQALSLLGYAWRLWQENKALDLMDQSLHETCDVAEFLRCVNVGLLCVQEDPSDRPVMSNVVFLLGSETATLPTPKQPAFTVRRGVFSTASSSSKPETCTNELTVSVDGR* 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7808537 7812910 - Vvi12g581 Vvi12g581 773104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g581 1004 SMART serkin_6 712 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g581 1004 SMART blect_4 97 220 IPR001480 -
Vvi12g581 1004 Pfam PAN-like domain 397 464 IPR003609 -
Vvi12g581 1004 Pfam S-locus glycoprotein domain 293 376 IPR000858 GO:0048544
Vvi12g581 1004 ProSiteProfiles EGF-like domain profile. 343 379 IPR000742 -
Vvi12g581 1004 Pfam Protein tyrosine and serine/threonine kinase 715 775 IPR001245 GO:0004672|GO:0006468
Vvi12g581 1004 Pfam Protein kinase domain 789 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g581 1004 ProSiteProfiles PAN/Apple domain profile. 397 480 IPR003609 -
Vvi12g581 1004 SUPERFAMILY Protein kinase-like (PK-like) 697 958 IPR011009 -
Vvi12g581 1004 ProSiteProfiles Bulb-type lectin domain profile. 91 217 IPR001480 -
Vvi12g581 1004 CDD PAN_AP_plant 397 480 - -
Vvi12g581 1004 CDD B_lectin 103 219 IPR001480 -
Vvi12g581 1004 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 672 1001 - -
Vvi12g581 1004 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 86 515 - -
Vvi12g581 1004 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 672 1001 - -
Vvi12g581 1004 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 86 515 - -
Vvi12g581 1004 Gene3D - 86 218 IPR036426 -
Vvi12g581 1004 Pfam Domain of unknown function (DUF3403) 961 1001 IPR021820 GO:0004674
Vvi12g581 1004 SUPERFAMILY alpha-D-mannose-specific plant lectins 144 245 IPR036426 -
Vvi12g581 1004 Pfam D-mannose binding lectin 143 234 IPR001480 -
Vvi12g581 1004 Gene3D Transferase(Phosphotransferase) domain 1 774 975 - -
Vvi12g581 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Vvi12g581 1004 ProSiteProfiles Protein kinase domain profile. 712 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g581 1004 Gene3D Phosphorylase Kinase; domain 1 687 773 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76121 PF00069 Pkinase 1.90E-25 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g581 - - vvi:100267196 1969.13