Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g582 ATGATTAAAGTAAGAAAGTATGACATTGAGTTTTCGGGTAAGGATGAAAGTGAATGCCGAAGAGAGTGCCTTAAGACCTGTCGCTGTCAAGCTTATGCTGGAGTTGGAACGATACGAAGGGGCCGTGCTAGCACCCCTCCCAAGTGCTGGATTTGGTCTGAAGATCTCGGTAGTCTTCAGGAGTATAACACAGATGGCTATAATCTTTCTCTCCGTGTCGCCAAATCAGATATAGAATCAACAGTAAGAAATTGTGAAACTTGTGGCACAAACTTGATCCCCTATCCACTAAGCACTGGACCAAACTGTGGTGATCCCATGTACTTCAGTTTCAGATGTGACAAGGCCACAGACCAAGTCTGGTTCGCCTTACCTAATGGCAGCTACCGAGTAACCAGCATCACTCCAGAGAGATCGAAGTTTCTCATCCAAGTGAATGATATTGATAACTGCGAAGCACGAAATTCACAAGACACGAAGATACTGCAGCTCAATCCACCTTTCAGGATAGCTAGCTGGTGCAATGCTGACACAGGAAATTCTAGCTCCAGCATGCCTATGAAAGGTCAGTATGAAATTGAAATAAGTTGGGATCCACCACCAGAGCCGGTTTGTAACTCAGCAACAGACTGCAAGGACTGGCCAAATTCGAGTTGCAGAACGCAAAATAGAACGAGAAGGTGTTTTTGTAATCAAAACTTCAAATGGAACAGCTCCAGTTTAAATTGTACACAAGATGGTGGCAATCTTGCGGAGGCTCCAACACCTGCAAACCAGAAGTCATCATCATCATCCTCTGCTCTGGTGGTTGTGGTAGGCATAGTAACTGCTGTTGTAGTAGTTGCACTTCTATGCATCATTGGTTGTATTGCTTATTTTCGAAAAAGAACCATCTCCAAAGGGCAAGAAAACAGAACAAATCCAGGGCTTCACTTGTATCATAGCGAGAGCCGTGTGAAAGACTTAATAGACTCTGAGCAATTCAAAGAAGATGATAAGAAAGGCATTGACATACCATTTTTCGACTTAGAAGACATACTGGCTGCTACAGATCACTTTTCAGATGCAAATAAGCTTGGACAGGGGGGCTTTGGGCCAGTTTACAAAGTAATAGTCCTTAATTTCCACATTAGTCTCATTTCAAGGTTTCTGGAATTTAAGAACGAGGTTGTGTTAATTGCCAAACTTCAGCATCGAAATTTGGTTAGACTTTTGGGCTATTGTATTGAAGGAGATGAGAAGATTTTACTCTATGAATACATGCCCAACAAAAGCTTAGACTCCTTCATATTTGATCAAACTCTATGCCTGTTACTGAACTGGGAGAAGCGATTTGATATCATTTTGGGAATTGCTCGAGGGCTACTTTATCTTCACCAAGATTCAAGATTGAAGATTATCCATAGAGACTTGAAAACAAGCAACATTCTACTTGATGACGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCAAGGATTTTTGAGAGTAAGCAAGTAGAAGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAAAAGTCTGATGTCTTTAGCTTTGGTGTTGTGGTACTTGAGATCATCAGTGGGAAGAGGAACACCAGATCTTATCAGTCTGACCTGAATCTGAGCCTTCTAGCCCATGCATGGAAGCTGTGGAAGGAAGACAGGGTGTTGGAGTTGATGGACCAGACACTAAGTCAAACATGCAACACAAATGAATTTCTGAGGTGCGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACACTGCCACACTCCCAGTTCCTAAACAACCAGCTTTTGTCGTAAGGAGAGACCTTTCCAGCTCAGCTTCGTCTTCAAGCAAACCAGAAGCATCCTTGAATAGTGAAATCCTAGCCACCATAGAAGAAGGTCGATAG 1992 42.97 MIKVRKYDIEFSGKDESECRRECLKTCRCQAYAGVGTIRRGRASTPPKCWIWSEDLGSLQEYNTDGYNLSLRVAKSDIESTVRNCETCGTNLIPYPLSTGPNCGDPMYFSFRCDKATDQVWFALPNGSYRVTSITPERSKFLIQVNDIDNCEARNSQDTKILQLNPPFRIASWCNADTGNSSSSMPMKGQYEIEISWDPPPEPVCNSATDCKDWPNSSCRTQNRTRRCFCNQNFKWNSSSLNCTQDGGNLAEAPTPANQKSSSSSSALVVVVGIVTAVVVVALLCIIGCIAYFRKRTISKGQENRTNPGLHLYHSESRVKDLIDSEQFKEDDKKGIDIPFFDLEDILAATDHFSDANKLGQGGFGPVYKVIVLNFHISLISRFLEFKNEVVLIAKLQHRNLVRLLGYCIEGDEKILLYEYMPNKSLDSFIFDQTLCLLLNWEKRFDIILGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFESKQVEASTNRVVGTYGYMSPEYALDGFFSEKSDVFSFGVVVLEIISGKRNTRSYQSDLNLSLLAHAWKLWKEDRVLELMDQTLSQTCNTNEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDTATLPVPKQPAFVVRRDLSSSASSSSKPEASLNSEILATIEEGR* 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7815429 7818514 - Vvi12g582 Vvi12g582 773105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g582 663 Gene3D Transferase(Phosphotransferase) domain 1 421 624 - -
Vvi12g582 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Vvi12g582 663 SMART serkin_6 353 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g582 663 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 659 - -
Vvi12g582 663 CDD PAN_AP_plant 1 74 - -
Vvi12g582 663 Pfam PAN-like domain 13 57 IPR003609 -
Vvi12g582 663 CDD STKc_IRAK 359 616 - -
Vvi12g582 663 Pfam Protein tyrosine and serine/threonine kinase 383 611 IPR001245 GO:0004672|GO:0006468
Vvi12g582 663 Gene3D Phosphorylase Kinase; domain 1 316 420 - -
Vvi12g582 663 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 659 - -
Vvi12g582 663 SUPERFAMILY Protein kinase-like (PK-like) 337 643 IPR011009 -
Vvi12g582 663 ProSiteProfiles Protein kinase domain profile. 353 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76122 PF07714 PK_Tyr_Ser-Thr 3.90E-39 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g582 - - vvi:100256737 1267.29