Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g583 ATGAGTCAAAACCTATTTTTTCCATCAAATTATGGTATTGAAAAGTATTTTTGGATGTCATGCCTACAAATTAAGGCAAATGGGATTGTGACATGTTCTGACCAAACACTGAGCCTTCTGGGTCAAGCATGGAAGCTATTGAAAGAAGACAAGGTGTTGGAGCTGATGGACCAGACACTAAGCGAAACATGCAACACAAAAGAATTTTTGAGGTGTGTGAATGCTGGGTTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACACTGCCACATTCCCAGTCCGATCCCTCTGTTACTACCACAAACCCAAAAAAAAATTCATAATTTTAGCTTTACTACCTATATCACATCGCGAGCTTCTGGAGTCGAACCAAATAGAATTCAAGTCACCAAGTTCTAACATATGCCCAATGCATATGCACTGTGGCTTCCAGGGCAAGTTTCCAGAGGGGCAAGAAATTGCAGTTAAGAGACTCTCTAGAGCTTCAGGACAAGGCCTACAGGAATTTAAGAATGAGGTTGTTTTAATTGCCAAACTTCAGCATCGGAATCTGGTTAGACTTTTGGGCTATTGTGTTGAAGGTGATGAGAAGATTTTACTCTATGAATATATGCCCAACAAAAGCTTAGATTCCTTCATATTTGATCGAACCCTATGCATGTTACTGAACTGGGAGAAGCGGTTTGACATCATTATGGGAATTGCTAGAGGGCTGCTGTATCTTCACCAAGATTCAAGATTGAAGATTATTCATAGGGACTTGAAAACAAGCAACATTCTACTTGATGATGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCGAGGATTTTTGACAGTAAGCAAGTAGAGGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTATGGTGCTTGAGATCATCAGTGGGAAGAGGAACACTGGCTTTTATCAGTCTGACCAAACACTGAGCCTTCTGGGTCAAGCATGGAAGCTATTGAAAGAAGACAAGGTGTTGGAGCTGATGGACCAGACACTATGCGAAACATGCAACACAAAAGAATTTTTGAGGTGTGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACATTGCAACAATGCCGGTTCCTAAACAACCGGCTTTTGTCCTAAAAAGAGACCTTTCTAGGACAGCTTCTTCTTCTAGCAAACCTGAAGCATCCTGGAACAGTGAAATCCTAGCCACCATAGAAGAAGGTCGATAG 1380 42.46 MSQNLFFPSNYGIEKYFWMSCLQIKANGIVTCSDQTLSLLGQAWKLLKEDKVLELMDQTLSETCNTKEFLRCVNAGLLCVQEDPSDRPTMAVAVVMLSSDTATFPVRSLCYYHKPKKKFIILALLPISHRELLESNQIEFKSPSSNICPMHMHCGFQGKFPEGQEIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKILLYEYMPNKSLDSFIFDRTLCMLLNWEKRFDIIMGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFDSKQVEASTNRVVGTYGYMSPEYALDGFFSEKSDVFSFGVMVLEIISGKRNTGFYQSDQTLSLLGQAWKLLKEDKVLELMDQTLCETCNTKEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDIATMPVPKQPAFVLKRDLSRTASSSSKPEASWNSEILATIEEGR* 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7824296 7855289 - Vvi12g583 Vvi12g583 773106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g583 459 Gene3D Transferase(Phosphotransferase) domain 1 217 420 - -
Vvi12g583 459 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 139 455 - -
Vvi12g583 459 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 29 106 - -
Vvi12g583 459 Gene3D Phosphorylase Kinase; domain 1 143 216 - -
Vvi12g583 459 ProSiteProfiles Protein kinase domain profile. 133 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g583 459 Gene3D Transferase(Phosphotransferase) domain 1 26 110 - -
Vvi12g583 459 Pfam Protein tyrosine and serine/threonine kinase 162 407 IPR001245 GO:0004672|GO:0006468
Vvi12g583 459 SMART serkin_6 156 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g583 459 SUPERFAMILY Protein kinase-like (PK-like) 161 442 IPR011009 -
Vvi12g583 459 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 139 455 - -
Vvi12g583 459 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 29 106 - -
Vvi12g583 459 CDD STKc_IRAK 158 412 - -
Vvi12g583 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76123 PF07714 PK_Tyr_Ser-Thr 6.00E-42 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g583 - - vvi:104880907 600.512