Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g584 ATGAATTCTTCAGGGGAAATCCAGTACTATCTGAATCCGAATACATCATCTCCAGACTGGTGGGCACCTCGAGATCGATGCAGTGTGTCAAAAGCTTGTGGGAAATTCGGTAGTTGTAACACTAAAAATCCTTTGATGTGCAAATGTTTACCTGGGTTCAAACCCGCCTCGCCGGATAAGTGGAAAACTGAAGACTTTTCAAGTGGGTGTACCAGAAAGTCTCCCATATGCGAGGAGAATTCTAGTAAAGACATGTTCCTGAGCTTAAAGATGATGAAAGTGAGAAAGCCAGACTCTCAGATTGACGCAGATCCAAATGATAGTGATCCTTGCAGAAAGGCTTGCCTTGAAAAATGCCAATGTCAAGCTTATGCTGAAACTTATATCAAACAAGAAAGAGGTGATACTGATGCCCTAAAATGCTTGATTTGGACGGAAGACCTTACTGATCTTCAGGAGGAGTATGCCTTTGATGCCCACAACCTCTCCGTTCGTGTGGCCATTTCAGATATAAAACCAACAGTAAGGAATTGTGAAACTTGTGGTTCAAGCATGATTCCTTATCCTCTAAGCACTGGATCAAAGTGTGGTGATCCCATGTACTTCAATTTTGAGTGTAACAGTACCACAGGCCAGGTTCAGTTCAAGGTACCTGGTGGTGCCTACCGAGTAACTAGCATTAACCCAGAGACATTAAGATTTGTAATCCAACTGAAAGAAGCAGATTGCAGTTCTCGAAGTTTAATTCCGCCACTAGACCCACCTTTTCGCATAACTGATGCGTGCAAAGAGGTTGGAACTGACCATTTTGGCTCTGAGATGTCATTGAAAAATAGTATTGAAGTAGAGATCAGTTGGGATCCACCATCGGAGCCGGCGTGTACCTCATCAGCAGATTGCAAAGACTGGCCAAATTCAATCTGCGGAACGCGAGATGGAATGAGTAGGTGCTTTTGCAATGAAAACTTCAAATGGAATAGCTCAAGTTTAAATTGTACACAAGGTGTCAAACCTGCTGATCAGAAGTCATCGTGGTCATCTCCAGTGGTTGTGGTAGGCATAACAATTGCTGTTGTTCTAGTTGCGGTTTTAGGCATCATTGGTTATATTGCTTATTTGCGCAAAAGAACCATCACCAAAAGGAAAGAGAACAGAGCAAATCAAGTGCTTCACTTATATGATAGTGAGAGTCGTGTGAAACACTCAATAGACTCGGAGCAATTCAAAGAAGAGGATAAGAAAGGCATTGATGTACCGTTTTTCGACTTAGAAGACATACTGGCTGCTACAAATAACTTTTCAGATGCAAATAAGCTTGGACAAGGGGGTTTTGGGCCAGTTTACAAGGTAATTGTTCTTAATTTCCATGTCCGATCCCTCTGTTACTACCACAAACCCAAAAAAAAATTCATAATTTTAGCTTTACTACCTATATCACATCGCGAGCTTCTGGAGTCGAACCAAATAGAATTCAAGTCACCAAGTTCTAACATATGCCCAATGCATATGCACTGTGGCTTCCAGGGCAAGTTTCCAGAGGGGCAAGAAATTGCAGTTAAGAGACTCTCTAGAGCTTCAGGACAAGGCCTACAGGAATTTAAGAATGAGGTTGTTTTAATTGCCAAACTTCAGCATCGGAATCTGGTTAGACTTTTGGGCTATTGTGTTGAAGGTGATGAGAAGATTTTACTCTATGAATATATGGCCAACAAAAGCTTAGATTCCTTCATATTTGATCGAACCCTATGCATGTTACTGAACTGGGAGAAGCGGTTTGACATCATTATGGGAATTGCTAGAGGGCTGCTGTATCTTCACCAAGATTCAAGATTGAAGATTATTCATAGGGACTTGAAAACAAGCAACATTCTACTTGATGATGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCGAGGATTTTTGACAGTAAGCAAGTAGAGGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAGAAGTCTGATGTCTTTAGCTTTGGTGTTATGGTGCTTGAGATCATCAGTGGGAAGAGGAACACTGGCTTTTATCAGTCTGACCAAACACTGAGCCTTCTGGGTCAAGCATGGAAGCTATTGAAAGAAGACAAGGTGTTGGAGCTGATGGACCAGACACTATGCGAAACATGCAACACAAAAGAATTTTTGAGGTGTGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACATTGCAACAATGCCGGTTCCTAAACAACCGGCTTTTGTCCTAAAAAGAGACCTTTCTAGGACAGCTTCTTCTTCTAGCAAACCTGAAGTATCCTGGAACAGTGAAATCCTAGCCACCATAGAAGAAGGTCGATAG 2433 42.21 MNSSGEIQYYLNPNTSSPDWWAPRDRCSVSKACGKFGSCNTKNPLMCKCLPGFKPASPDKWKTEDFSSGCTRKSPICEENSSKDMFLSLKMMKVRKPDSQIDADPNDSDPCRKACLEKCQCQAYAETYIKQERGDTDALKCLIWTEDLTDLQEEYAFDAHNLSVRVAISDIKPTVRNCETCGSSMIPYPLSTGSKCGDPMYFNFECNSTTGQVQFKVPGGAYRVTSINPETLRFVIQLKEADCSSRSLIPPLDPPFRITDACKEVGTDHFGSEMSLKNSIEVEISWDPPSEPACTSSADCKDWPNSICGTRDGMSRCFCNENFKWNSSSLNCTQGVKPADQKSSWSSPVVVVGITIAVVLVAVLGIIGYIAYLRKRTITKRKENRANQVLHLYDSESRVKHSIDSEQFKEEDKKGIDVPFFDLEDILAATNNFSDANKLGQGGFGPVYKVIVLNFHVRSLCYYHKPKKKFIILALLPISHRELLESNQIEFKSPSSNICPMHMHCGFQGKFPEGQEIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKILLYEYMANKSLDSFIFDRTLCMLLNWEKRFDIIMGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFDSKQVEASTNRVVGTYGYMSPEYALDGFFSEKSDVFSFGVMVLEIISGKRNTGFYQSDQTLSLLGQAWKLLKEDKVLELMDQTLCETCNTKEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDIATMPVPKQPAFVLKRDLSRTASSSSKPEVSWNSEILATIEEGR* 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7856362 7859726 - Vvi12g584 Vvi12g584 773107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g584 810 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672|GO:0006468
Vvi12g584 810 SMART serkin_6 433 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g584 810 ProSiteProfiles Protein kinase domain profile. 433 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g584 810 CDD STKc_IRAK 509 763 - -
Vvi12g584 810 Pfam S-locus glycoprotein domain 5 56 IPR000858 GO:0048544
Vvi12g584 810 SUPERFAMILY Protein kinase-like (PK-like) 418 793 IPR011009 -
Vvi12g584 810 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 449 - -
Vvi12g584 810 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 490 806 - -
Vvi12g584 810 ProSiteProfiles PAN/Apple domain profile. 77 167 IPR003609 -
Vvi12g584 810 Gene3D Phosphorylase Kinase; domain 1 495 567 - -
Vvi12g584 810 Gene3D Phosphorylase Kinase; domain 1 393 463 - -
Vvi12g584 810 PIRSF SRK 265 346 IPR024171 GO:0004674
Vvi12g584 810 PIRSF SRK 1 192 IPR024171 GO:0004674
Vvi12g584 810 PIRSF SRK 293 457 IPR024171 GO:0004674
Vvi12g584 810 PIRSF SRK 506 810 IPR024171 GO:0004674
Vvi12g584 810 Pfam PAN-like domain 77 151 IPR003609 -
Vvi12g584 810 Pfam Protein tyrosine and serine/threonine kinase 513 758 IPR001245 GO:0004672|GO:0006468
Vvi12g584 810 Gene3D Transferase(Phosphotransferase) domain 1 568 771 - -
Vvi12g584 810 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 449 - -
Vvi12g584 810 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 490 806 - -
Vvi12g584 810 CDD PAN_AP_plant 77 167 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76124 PF07714 PK_Tyr_Ser-Thr 2.20E-41 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g584 - - vri:117926604 1313.13