Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi12g586 | ATGCCATATGCAATACTCAGCTTGTTATCCAACTTCAGCAAGACCGGCAAGTCAACCAGCCCTGGAAAATTCTACAATAGAACCCTTGAAATAGTGTCCTCCAGGTATAAGAATACCAGTCGGTTGGTGATGAGTTCTTCAGGGGAAATCAGGTACTATCTGAATCCGAGTAGATCATCTCCAGACTGGTGGGCACCGCAAGATCGATGCAGTGTGCCAAAAGCTTGTGGGAAATTCGGTAGTTGTAACACTAACAATGCTTTGATGTGCAAATGTTTACCTGGGTTCAAACCCGCCTCGCCGGATATTTGGAAAACTGAAGAGTTTTCAAGTGGGTGTACCAGAAAGTCTCCCATATGCGAGAAGAGTTCCAGTGAAGACGTGTTCCTGAGCTTAAAGATGATGAAAGTGAGAAAGCCAGACCGTGTGATTATACCAGATACGAATGATAGTGATTATTGCAGAAAGGCTTGCCTTAAAGAATGCCGATGTCAAGCTTATGCTGAAACTTATATCAAACGACAAAGAGGTGTCACTGATGCCCTAGAATATTGCTTGATTTGGACGGATGACCTTACTGATCTTCAGGAGGAGTATGCCTCTGATGCCTACAACCTCTCCGTTCGTGTGGCCATTTCAGATATAAAATCAACAGTAAGAAATTGTGAAACTTGTGGCACAAACTTGATCCCCTATCCACTAAGCACTGGACCAAACTGTGGTGATCCCATGTACTTCAGTTTCAGATGTGACAAGGCCACAGACCAAGTCTGGTTCGCCTTACCTAATGGCAGCTACCGAGTAACCAGCATCACTCCAGAGAGATCGAAGTTTCTCATCCAAGTGAATGATATTGATAACTGCGAAGCACGAAATTCACAAGACACGAAGATACTGCAGCTCAATCCACCTTTCAGGATAACTAGCTGGTGCAATGCTGACACAGGAAATTCTAGCTCCAGCATGCCTATGAAAGGTCAGTATGAAATTGAAATAAGTTGGGATCCACCACCAGAGCCGGTTTGTAACTCAGCAACAGACTGCAAGGACTGGCCAAATTCGAGTTGCAGAACGCAAAATAGAACGAGAAGGTGTTTTTGTAATCAAAACTTCAAATGGAACAGCTCCAGTTTAAATTGTACACAAGGGCGAGAAATTGCAGTAAAGAGACTCTCAAGAGCTTCGGGACAAGGCTTACAGGAATTTAAGAACGAGGTTGTGTTAATTGCCAAACTTCAGCATCGAAATTTGGTTAGACTTTTGGGCTATTGTATTGAAGGAGATGAGAAGATTTTACTCTATGAATACATGCCCAACAAAAGCTTAGACTCCTTCATATTTGATCAAACTCTATGCCTGTTACTGAACTGGGAGAAGCGATTTGATATCATTTTGGGAATTGCTCGAGGGCTACTTTATCTTCACCAAGATTCAAGATTGAAGATTATCCATAGAGACTTGAAAACAAGCAACATTCTACTTGATGACGAGATGAATCCCAAAATTTCAGACTTTGGCTTGGCAAGGATTTTTGAGAGTAAGCAAGTAGAAGCAAGCACAAACAGAGTAGTTGGAACTTATGGCTATATGTCTCCAGAGTATGCATTGGATGGGTTTTTCTCAGAAAAGTCTGATGTCTTTAGCTTTGGTGTTGTGGTACTTGAGATCATCAGCGGGAAGAGGAACACCAGATCTTATCAGTCTGACCGGAATCTGAGCCTTCTAGCCCATGCATGGAAGCTGTGGAAGGAAGACAGGGTGTTGGAGTTGATGGACCAGACACTAAGTGAAACATGTAAAACAAATGAATTTCTGAGGTGCGTGAATGTTGGGCTGTTGTGTGTGCAAGAAGACCCAAGTGACCGTCCCACCATGGCAGTTGCAGTTGTAATGCTCAGCAGTGACACTGCCACACTCCCAGTTCCTAAACAACCAGCTTTTGTCGTAAGGAGAGACCTTTCCAGCTCAGCTTCTTCTTCAAGCAAACCAGAAGCATCCTTGAATAGTGAGTTCCTAGCCACCATAGAAGAAGGTCGATAG | 2040 | 43.38 | MPYAILSLLSNFSKTGKSTSPGKFYNRTLEIVSSRYKNTSRLVMSSSGEIRYYLNPSRSSPDWWAPQDRCSVPKACGKFGSCNTNNALMCKCLPGFKPASPDIWKTEEFSSGCTRKSPICEKSSSEDVFLSLKMMKVRKPDRVIIPDTNDSDYCRKACLKECRCQAYAETYIKRQRGVTDALEYCLIWTDDLTDLQEEYASDAYNLSVRVAISDIKSTVRNCETCGTNLIPYPLSTGPNCGDPMYFSFRCDKATDQVWFALPNGSYRVTSITPERSKFLIQVNDIDNCEARNSQDTKILQLNPPFRITSWCNADTGNSSSSMPMKGQYEIEISWDPPPEPVCNSATDCKDWPNSSCRTQNRTRRCFCNQNFKWNSSSLNCTQGREIAVKRLSRASGQGLQEFKNEVVLIAKLQHRNLVRLLGYCIEGDEKILLYEYMPNKSLDSFIFDQTLCLLLNWEKRFDIILGIARGLLYLHQDSRLKIIHRDLKTSNILLDDEMNPKISDFGLARIFESKQVEASTNRVVGTYGYMSPEYALDGFFSEKSDVFSFGVVVLEIISGKRNTRSYQSDRNLSLLAHAWKLWKEDRVLELMDQTLSETCKTNEFLRCVNVGLLCVQEDPSDRPTMAVAVVMLSSDTATLPVPKQPAFVVRRDLSSSASSSSKPEASLNSEFLATIEEGR* | 680 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 7919321 | 7931527 | - | Vvi12g586 | Vvi12g586 | 773109 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi12g586 | 679 | ProSiteProfiles | PAN/Apple domain profile. | 120 | 211 | IPR003609 | - | |
| Vvi12g586 | 679 | SMART | serkin_6 | 364 | 632 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi12g586 | 679 | Gene3D | Transferase(Phosphotransferase) domain 1 | 437 | 640 | - | - | |
| Vvi12g586 | 679 | CDD | STKc_IRAK | 383 | 632 | - | - | |
| Vvi12g586 | 679 | SUPERFAMILY | Protein kinase-like (PK-like) | 381 | 659 | IPR011009 | - | |
| Vvi12g586 | 679 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 381 | 676 | - | - | |
| Vvi12g586 | 679 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 9 | 217 | - | - | |
| Vvi12g586 | 679 | Pfam | S-locus glycoprotein domain | 34 | 99 | IPR000858 | GO:0048544 | |
| Vvi12g586 | 679 | Pfam | Protein tyrosine and serine/threonine kinase | 381 | 627 | IPR001245 | GO:0004672|GO:0006468 | |
| Vvi12g586 | 679 | ProSiteProfiles | Protein kinase domain profile. | 360 | 647 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Vvi12g586 | 679 | CDD | PAN_AP_plant | 120 | 211 | - | - | |
| Vvi12g586 | 679 | PANTHER | S-LOCUS LECTIN KINASE FAMILY PROTEIN | 9 | 217 | - | - | |
| Vvi12g586 | 679 | PANTHER | S-LOCUS LECTIN KINASE FAMILY PROTEIN | 381 | 676 | - | - | |
| Vvi12g586 | 679 | Gene3D | Phosphorylase Kinase; domain 1 | 369 | 436 | - | - | |
| Vvi12g586 | 679 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 482 | 494 | IPR008271 | GO:0004672|GO:0006468 | |
| Vvi12g586 | 679 | Pfam | PAN-like domain | 120 | 195 | IPR003609 | - | |
| Vvi12g586 | 679 | MobiDBLite | consensus disorder prediction | 655 | 679 | - | - |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 76126 | PF07714 | PK_Tyr_Ser-Thr | 5.90E-42 | CL0016 | Vvi | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi12g586 | - | - | vvi:109123508 | 664.455 |