Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g630 ATGGCCGATGCCGAGGATATCCAGCCTCTTGTGTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATGCTTATGTAGGTGATGAAGCCCAGTCAAAAAGAGGTATCCTCACCTTGAAATACCCAATTGAGCATGGCATTGTCAGCAATTGGGATGACATGGAGAAGATCTGGCATCACACTTTCTATAATGAGCTTCGTGTTGCTCCTGAGGAGCACCCAGTACTTCTTACAGAAGCTCCTCTCAACCCCAAGGCTAATAGGGAGAAAATGACCCAGATTATGTTTGAGACCTTCAACGTACCTGCCATGTATGTTGCTATCCAAGCTGTGCTGTCTCTGTATGCCAGTGGTCGTACAACAGGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCCCGGAATCCACGAAACTACCTACAATTCCATCATGAAGTGTGATGTTGATATCAGGAAGGACCTGTACGGAAACATTGTGCTCAGTGGAGGCTCAACCATGTTCCCAGGAATTGCTGACAGGATGAGCAAGGAAATTACTGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTGGTGGCACCTCCCGAGAGAAAGTACAGTGTCTGGATTGGAGGATCAATATTAGCATCTCTCAGCACATTCCAACAGATGTGGATATCCAAGGGTGAATACGATGAATCCGGTCCTGCCATTGTTCACAGGAAGTGCTTCTAA 867 48.1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8678865 8681135 + Vvi12g630 Vvi12g630 773153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g630 288 Pfam Actin 186 288 IPR004000 -
Vvi12g630 288 Pfam Actin 5 184 IPR004000 -
Vvi12g630 288 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vvi12g630 288 Gene3D - 4 152 - -
Vvi12g630 288 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vvi12g630 288 Gene3D Actin; Chain A, domain 2 36 73 - -
Vvi12g630 288 PRINTS Actin signature 28 37 IPR004000 -
Vvi12g630 288 PRINTS Actin signature 51 62 IPR004000 -
Vvi12g630 288 PRINTS Actin signature 63 85 IPR004000 -
Vvi12g630 288 PRINTS Actin signature 117 130 IPR004000 -
Vvi12g630 288 PRINTS Actin signature 142 161 IPR004000 -
Vvi12g630 288 ProSitePatterns Actins signature 2. 269 277 IPR004001 -
Vvi12g630 288 PANTHER ACTIN-2-LIKE 185 287 - -
Vvi12g630 288 PANTHER ACTIN-2-LIKE 1 184 - -
Vvi12g630 288 PANTHER ACTIN 1 184 IPR004000 -
Vvi12g630 288 PANTHER ACTIN 185 287 IPR004000 -
Vvi12g630 288 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Vvi12g630 288 SMART actin_3 7 288 IPR004000 -
Vvi12g630 288 Gene3D - 247 286 - -
Vvi12g630 288 CDD NBD_sugar-kinase_HSP70_actin 10 215 - -
Vvi12g630 288 Gene3D - 153 244 - -
Vvi12g630 288 SUPERFAMILY Actin-like ATPase domain 148 288 IPR043129 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g630 K10355 - ccav:112504665 469.929