Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g644 ATGAGGACGTTTACTATCTTTGAAAGAGCCTTCAAGGCTTTTCGTGACAACCCTTCACTCTCCAAGTTGATGGTTGTCTGCACAAAAATAATCGGTGGGGGCTTATTAGCTTTCGCAGAAACGAGGCCATTCTCCGGCTCAGATTCAGTACCAAAGAAGAAAGTGGTGGTCCTTGGAACTGGGTGGGCAGGCACAAGTTTCCTGAAGAACTTGAAGAGTTCCACCTTCGAAGTCCAGGTGGTGTCGCCCCGTAACTATTTTGCATTTACTCCTCTGCTGCCAAGTGTTACCTGTGGCACGGTGGAAGCTCGCAGCATTGTGGAGCCTATTCGGAACATTGTCAGGAAGAAAGGTATAAATATTGAATTCAAGGAAGCTGAATGCTACAAGATTGATACAGATAATAATAAAGTTTATTGTAGATCAGGCCAGGACACCAATTTAGGAGGGGAAGAGGAATTTTCTGTAGATTATGACTACTTGGTGATAGCCATGGGGGCTAGATCAAACACATTCAACACTCCTGGTGTGGTAGAGAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGGATTCGTAGGACTGTGATCGACTGCTTTGAGAGGGCAAGCCTTCCCAATCTTAGTGAAGAAGAGAGGAAGAGGATCCTGCATTTCGTGGTTGTTGGGGGTGGCCCAACAGGAGTGGAGTTCGCTGCAGAACTTCATGATTTTGTTCTTGAAGACTTAGCTAAACTGTATCCTAGTGTAAAAAATCTTGCAAAGATAACACTCCTCGAGGCAGGCGATCATATCTTGAACATGTTTGACAAAAGAATTACTGCTTTTGCTGAAGAGAAGTTCCAGAGAGATGGTATCCATCTGAAAACAGGGTCAATGGTGATCAAAGTAGATGATAAACATATTTCTACGAAGGAAAGATCAACTGGGGAAGTTTCAGAAATCCCATTTGGAATGGTCGTATGGTCAACTGGTATTGGTACTCGTCCTGTCATAATGGACTTCATGAATCAGATTGGCCAGACTAACAGGCGGGCTTTAGCAACTGATGAATGGTTGAGGGTGGAGGGATGCAATAACATATATGCTCTAGGTGACTGTGCTACAATTAATCAACGAAAAGTCATGGAAGACATTTCTGTGATATTCAGCAAGGCAGACAAGAATAATTCAGGAACTCTAAATTTGAAAGACTTCCAAGAAGTAATTGATGACATTTGTGAGAGGTACCCTCAAGTGGGGCTATACTTGAAAAAGAGGCAGATGAGAAACATTGCTGATTTACTGAAGAGTTCTCAAGCTGAAAAACAGGGAACTGAATTGGATATTGCGTTGTTCACATCAGCTCTTTCTGAAGTGGATTCCCAGATGAAAAATCTTCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGCCAGTACCTTGCCAACTGCTTCAATCGCATGGAAGAGTGTGAAAGGAATCCTGAAGGTCCTCTCAGGTTCAGGGGAACAGGACGCCATCGGTTTCATCCTTTCAGGTACAAGCATCTTGGGCAGTTTGCTCCACTGGGAGGTGAGCAAGCTGCAGCTCAACTCCCTGGGGATTGGGTTTCAATTGGTCAAAGCACCCAATGGCTCTGGTATTCAGTATATGCAAGCAAGCAAGTCAGCTGGCGCACAAGAGCATTGGTGGTATCTGACTGGGGACGGCGGTTCATTTTTGGAAGGGACTCAAGCAGAATCTGA 1728 44.62 MRTFTIFERAFKAFRDNPSLSKLMVVCTKIIGGGLLAFAETRPFSGSDSVPKKKVVVLGTGWAGTSFLKNLKSSTFEVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIVRKKGINIEFKEAECYKIDTDNNKVYCRSGQDTNLGGEEEFSVDYDYLVIAMGARSNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPNLSEEERKRILHFVVVGGGPTGVEFAAELHDFVLEDLAKLYPSVKNLAKITLLEAGDHILNMFDKRITAFAEEKFQRDGIHLKTGSMVIKVDDKHISTKERSTGEVSEIPFGMVVWSTGIGTRPVIMDFMNQIGQTNRRALATDEWLRVEGCNNIYALGDCATINQRKVMEDISVIFSKADKNNSGTLNLKDFQEVIDDICERYPQVGLYLKKRQMRNIADLLKSSQAEKQGTELDIALFTSALSEVDSQMKNLPATAQVAAQQGQYLANCFNRMEECERNPEGPLRFRGTGRHRFHPFRYKHLGQFAPLGGEQAAAQLPGDWVSIGQSTQWLWYSVYASKQVSWRTRALVVSDWGRRFIFGRDSSRI* 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8892147 8897392 - Vvi12g644 Vvi12g644 773167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g644 575 SUPERFAMILY EF-hand 333 452 IPR011992 -
Vvi12g644 575 SUPERFAMILY FAD/NAD(P)-binding domain 219 372 IPR036188 -
Vvi12g644 575 Gene3D - 46 410 - -
Vvi12g644 575 Gene3D - 418 574 - -
Vvi12g644 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 55 74 - -
Vvi12g644 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Vvi12g644 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Vvi12g644 575 PANTHER - 5 575 - -
Vvi12g644 575 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Vvi12g644 575 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Vvi12g644 575 ProSitePatterns EF-hand calcium-binding domain. 388 400 IPR018247 -
Vvi12g644 575 PANTHER NADH DEHYDROGENASE 5 575 IPR045024 GO:0003954|GO:0006116
Vvi12g644 575 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 378 IPR023753 GO:0016491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g644 K03885 - vvi:100249308 1148.27