Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g645 ATGACGATTTTCTCCTTCTTCTCCGGAGCCTCCAGAGCTCTCGGTTCCAGCTCTAAGCTTCTTGTTATCCTCTCTATCAGTAGTGGTGGTCTTGTGGCATACTCAGAATCACAAACAGATGCTGGTGCACAAAGTGCTGAGATCAAGCAAAAGGAACCCCAGAAGAAGAGAGTGGTGGTGCTTGGAACTGGATGGGCTGGCACTAGTTTTCTGAAAGATTTGGATATCTCATCATATGATGTTAAAGTGGTTTCGCCCAGGAATTATTTTGCATTTACTCCTCTTTTACCTAGTGTCACATGTGGAACAGTTGAAGCACGAAGCATTGTAGAGCCAATTCGGAACATTATAAAGAAGAGAAATGGAGAAATCCAATATTGGGAAGCGGAATGTGTTAAGATTGATGCTGCAAACAAAAAAATTCGATGTCGGTCTGTCATTGACAACAGCTTGGTAGGCAATGAAGAATTTCTTGTAGACTATGACTACTTGGTTATAGCAATGGGAGCACAAGTAAATACTTTTAACACCCCTGGCGTCAACGAACACTGCCATTTTCTAAAGGAAATAGAGGATGCTCAGAAGATCCGAAGGAGTGTGATTGATTGTTTTGAAAGGGCAGTCCTTCCTGACTTAACTGATGAAGAGCGAAGGAGAAACCTTCATTTTGTTATTGTTGGAGGGGGTCCCACTGGTGTTGAATTTGCTGCAGAACTACATGACTTCATCCTAGAAGATTTAGTCAAGCTATATCCTATGGTTAAAGATCTTGTGAAAATAACAGTGATCCAATCAGGAGATCATATCTTAAACATGTTTGATGAGAGGATTAGTTCATTTGCTGAAAGGAAGTTTGGAAGAGATGGTATCGAAGTTCAAACAGGATGTCGGGTTACAGGTGTTTCCGATAAGGCAATGACCGTGAAGGTGAAATCAAAGGGAGAAATTTGTTCTGTGCCTTATGGAATGGTTGTGTGGTCCACTGGTATTGTCACTCGCCCAGTTTTGAGAGACTTTATGGATCAAATTGGCCAGAATAAAAGACATGTTCTAACAACTAATGAATGGTTGCGAGTAGAGGGATGTGATGGTGTGTATGCTCTTGGTGATTGTGCTGCTGTAGCTCAACGTCGAGTCATGGAAGATATCTCGACCATATTTAAGACCGCCGACAAAGATAATTCTGGTACCTTAACTGTTAAAGAATTCCAAGATGTAATTGACGACATCCTCGTAAGGTATCCCCAAGTGGAACTATATTTGAAGAACAAGCATCTGAATGATGTGAAAGATCTGTTGAAGGATCCGCAGGGCCATGAGAGAAAGGAAGTGGACATTGAAGGGTTTAAGTCTGCCCTTCGTCATGTGGATTCACAGATGAAGAGCCTTCCTGCAACCGCTCAGGTTGCTGCTCAACAAGGTGCATACCTCTCTAGTTGCTTTAGCCGTAGGCAGCAATGCCAAGAGACCCCAGAAGGGCCTTTACGTTTTAGAGATTCTGGCCGTCATCATTTTCGTCCCTTTCGGTACAAGCATTTGGGGCAATTTGCCCCTCTGGGAGGAGAGCAAGCAGCTGCAGAGCTCCCTGGAGACTGGGTATCCATCGGCCACAGCACCCAGTGGCTCTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACAAGATTCTTGGTGGTATCTGATTGGACGAGGAGATTCATTTTCGGGAGGGATTCAAGCCGAATATAA 1734 43.83 MTIFSFFSGASRALGSSSKLLVILSISSGGLVAYSESQTDAGAQSAEIKQKEPQKKRVVVLGTGWAGTSFLKDLDISSYDVKVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNIIKKRNGEIQYWEAECVKIDAANKKIRCRSVIDNSLVGNEEFLVDYDYLVIAMGAQVNTFNTPGVNEHCHFLKEIEDAQKIRRSVIDCFERAVLPDLTDEERRRNLHFVIVGGGPTGVEFAAELHDFILEDLVKLYPMVKDLVKITVIQSGDHILNMFDERISSFAERKFGRDGIEVQTGCRVTGVSDKAMTVKVKSKGEICSVPYGMVVWSTGIVTRPVLRDFMDQIGQNKRHVLTTNEWLRVEGCDGVYALGDCAAVAQRRVMEDISTIFKTADKDNSGTLTVKEFQDVIDDILVRYPQVELYLKNKHLNDVKDLLKDPQGHERKEVDIEGFKSALRHVDSQMKSLPATAQVAAQQGAYLSSCFSRRQQCQETPEGPLRFRDSGRHHFRPFRYKHLGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRFLVVSDWTRRFIFGRDSSRI* 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8897887 8904130 - Vvi12g645 Vvi12g645 773168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g645 577 SMART efh_1 382 410 IPR002048 GO:0005509
Vvi12g645 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Vvi12g645 577 SUPERFAMILY FAD/NAD(P)-binding domain 55 274 IPR036188 -
Vvi12g645 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 56 381 IPR023753 GO:0016491
Vvi12g645 577 Gene3D - 423 576 - -
Vvi12g645 577 Gene3D - 45 407 - -
Vvi12g645 577 PANTHER NADH DEHYDROGENASE 6 577 IPR045024 GO:0003954|GO:0006116
Vvi12g645 577 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B2, MITOCHONDRIAL-RELATED 6 577 - -
Vvi12g645 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 58 77 - -
Vvi12g645 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Vvi12g645 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Vvi12g645 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Vvi12g645 577 SUPERFAMILY FAD/NAD(P)-binding domain 221 375 IPR036188 -
Vvi12g645 577 SUPERFAMILY EF-hand 331 458 IPR011992 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g645 K03885 - vvi:100254643 1140.18