Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g672 ATGAGTCAGTTCCGTCGTCTGTCCCACGCGCTTCAAAACGCGTTTTCCAACATGCTTCTATCTCCGGGCCACTCTCCTCGGCACCTTTCTTCGCCTTCGCCTTCTCTCTCAGAGAAGCCTCAGCAAAACCGTAATTCTTCTTCTGTTTTAAACGTTTCTGCGAACCCTAGGAAGGAAGTAACAGTTCTCGATGAGGATACGTACGTGGCCGCAATCGAGAAGATCGTTGAGCGCGACTTCTTCCCCGACATTCCGAAGCTTCGCGACCGCCTCGAGTGGCTGGAGGCTGTTAGGTCCGGTGACCCTCTTCGAATTCGTGATGTTCAGTTGAAGATCAGGGATCGGCGGGGCCGGAAGGCAGTGCAGATGATGATTCTGAGGCTTTGCCGTTATCCCTCGATCAGTTTTTCAGGAGGTATACTAGATGTGAAGAGGGATCGGATTACAGACGGGTATGGGACTTCGGATCAGCCGCCGAGTACTTTGGATGGGTGGAAATATACAGCAAAGAATTTGTTGATGTATCATCCTGCTGACCGAGGTGAGGCCCCATTGACCGAGGAGGAACGGGCAGAGAGGCTTAACGGTTTGACAAAGGAAGTTAACCTCACAAACACTAGGTTTCATGGTGCTACTCCTGTACCATTATCATTGTCAGAGAGGGAAGGGGATAAGTCTAAGAAGTATGATTTAGAGGATTTGAGGAAGACGCCGAATCCATTTTATGTGGAATCTAGAAAGAGAGCAGATAATGGGTATAGTTATGTGAAAACGCCCTCACCTGCACCAGGTGTGGATGAATCACCATTCATTACATGGGGAGAAATAGAAGGGACGCCATTGAGGCTGGAGCCCGAGGACACACCAATTGGTATTGGCGGTAGTGGTGATGGTCCCCATTTTAAGATTCCATGTCCTCCTTCTAGAGATTTGAAGGCACATTCATTGTCAAGGGAGGCTGCTCGGAAATTGAGGGAGAGGTCTAAGATGTTTCAGAAGCCACCATTGCCATCGCCAGTTCGAGGGGGAAGTGCAAGTCCAAGTGTAAGAACGCTTTCTCATGCAGCCCAGAAGTTTGTGAGGAATGCAATTGCCAAGTCATCATGCTCAGTTGATGAATCCCTTCGTGCTAGTTACCGAGGTGCAAGCCCTGGTATCAGTACTCCAAAAATGCTTTATTTCCATCCAAACGACGCCGTTTCAAGGGCAACATACTTCCGATTTAACCGCAACGCGGCAATCCGCCAATCCGCCAATATAAATATAGCTGCCAAAGCGCCGCCTTTGGCATTCCACGCTTTCGCCGTAGAACACATTCGGGAAGCGGTTTCCGTGTTCTGTTTTCTCCTTTCAAAACACTTTTTGGAAACGCTTTTCGGAAACATTTTCTTTTCCCTTTCTTCCTCTTCCATTCAATTCGCAGAGATAAAATGGAGAAAGCATGGTGGAGTCTGGTTCGTGCTTCTGAGAATAACTCGTAATCTCAAGGCAATTGTTTCCAGCACGGGAGATTGGATCTTGACTTGTCAAACAGGCTGCGTTGATTTCTGGCTTTTGTCAGTGAATAGTATTTCTTCGTCATCTTCAAAGATGCCATCGGCAAGTCTCAATTCATCTGATCATGACACAGAACCATTTGTTGAGGTTGATCCCACTGGTCGATATGGCCGGTACAGTGACCTGCTGGGTCATGGTGCAGTGAAGAAGGTTTATCGGGCATTTGATCAGGAGGAAGGCATTGAGGTTGCTTGGAATCAGGTCCAGTTGAGGAATTTCAGTGAAGATAAGTCAATGGTTGACCGACTTCACTCAGAGGTTAAGCTGCTGAGCACATTGAAGAATGAGAGCATAATTGTGTTGTACAGTGTTTGGAAGGACAATGAACATAACACATTGAACTTCATCACTGAGGTATGCACATCGGGGAATCTGAGGGATTATAGGAAGAGGCATCGCCATGTGTCCATTAAAGCCTTGAAAAAATGGTCAAGGCAAGTACTTAAGGGTTTGGAGTATCTCCATACTCACGACCCTTGCATCATTCACCGAGATCTCAACTGCAGTAACATCTTTATCAATGGAAACATCGGTCAGGTGAAAATTGGTGATCTGGGGTTGGCAGCCATTGTGGGGAAGAACCACTTAGCACATTCAGTACTGGGAACACCAGAGTACATGGCGCCAGAGCTGTACGAGGAGGATTACACTGAGATGGTGGACATCTACTCATTTGGAATGTGCTTGCTGGAGATGGTCACAATGGAGATTCCTTACAGTGAGTGCGACAACATTGCCAAGATATACAAAAAGGTGACAAGCGGAGTAGGGCCCTTAGCCATGAACAAGGTGTCAGACCCAGAAGTGAAGTTCTTCATTGAGAAATGCATAGCCCAGCCAAGGGCAAGACCTTCAGCCTCTGAGCTCCTCAATGACCCTTTCTTCTCTGAACTCAATGATGGAGATGCTACCATCATTGATGGACAAGCTATCCAGTGA 2496 47.32 MSQFRRLSHALQNAFSNMLLSPGHSPRHLSSPSPSLSEKPQQNRNSSSVLNVSANPRKEVTVLDEDTYVAAIEKIVERDFFPDIPKLRDRLEWLEAVRSGDPLRIRDVQLKIRDRRGRKAVQMMILRLCRYPSISFSGGILDVKRDRITDGYGTSDQPPSTLDGWKYTAKNLLMYHPADRGEAPLTEEERAERLNGLTKEVNLTNTRFHGATPVPLSLSEREGDKSKKYDLEDLRKTPNPFYVESRKRADNGYSYVKTPSPAPGVDESPFITWGEIEGTPLRLEPEDTPIGIGGSGDGPHFKIPCPPSRDLKAHSLSREAARKLRERSKMFQKPPLPSPVRGGSASPSVRTLSHAAQKFVRNAIAKSSCSVDESLRASYRGASPGISTPKMLYFHPNDAVSRATYFRFNRNAAIRQSANINIAAKAPPLAFHAFAVEHIREAVSVFCFLLSKHFLETLFGNIFFSLSSSSIQFAEIKWRKHGGVWFVLLRITRNLKAIVSSTGDWILTCQTGCVDFWLLSVNSISSSSSKMPSASLNSSDHDTEPFVEVDPTGRYGRYSDLLGHGAVKKVYRAFDQEEGIEVAWNQVQLRNFSEDKSMVDRLHSEVKLLSTLKNESIIVLYSVWKDNEHNTLNFITEVCTSGNLRDYRKRHRHVSIKALKKWSRQVLKGLEYLHTHDPCIIHRDLNCSNIFINGNIGQVKIGDLGLAAIVGKNHLAHSVLGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDNIAKIYKKVTSGVGPLAMNKVSDPEVKFFIEKCIAQPRARPSASELLNDPFFSELNDGDATIIDGQAIQ* 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9089289 9097431 - Vvi12g672 Vvi12g672 773195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g672 831 MobiDBLite consensus disorder prediction 325 348 - -
Vvi12g672 831 MobiDBLite consensus disorder prediction 209 233 - -
Vvi12g672 831 ProSiteProfiles Protein kinase domain profile. 556 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g672 831 CDD STKc_WNK 554 814 - -
Vvi12g672 831 Pfam Nuclear protein Es2 61 116 IPR019148 -
Vvi12g672 831 Pfam Nuclear protein Es2 143 359 IPR019148 -
Vvi12g672 831 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 531 818 - -
Vvi12g672 831 SUPERFAMILY Protein kinase-like (PK-like) 550 814 IPR011009 -
Vvi12g672 831 MobiDBLite consensus disorder prediction 18 52 - -
Vvi12g672 831 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 531 818 - -
Vvi12g672 831 Gene3D Transferase(Phosphotransferase) domain 1 639 820 - -
Vvi12g672 831 Pfam Protein kinase domain 560 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g672 831 Gene3D Phosphorylase Kinase; domain 1 540 637 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g672 Vvi19g610 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76129 PF00069 Pkinase 6.90E-51 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g672 K08867 - vvi:100259620 614.764