Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g673 ATGAAGGTTCCAACAACCAGTGATTTTGGAACACTTGTGCAAGTCCAAGATCAATTCGAGTGGCAATCATTTACATATGACTTAAATGATGTTGATTCTAATAAATTGCAGCAGAGACAAATTCCTGATACAGGGGTCCATGCATCACAATCTCATCAAGAAGCAATCATGCCCTCCATCATACCTGAGAAGGCATCAGAAGATGGATACAACTGGCGAAAGTATGGGCAAAAGCATGTTAAAGGAAATGAGTTTATTCGTAGCTATTACAGATGTACACATCCTAACTGCCAAGTGAAAAAGCAACTGGAACGCTCCCATGATGGGCAAATAACTGATATTATTTATTTTGGTAAGCATGATCACCCTAAACTTCAAGTTGATCTTCCGTTGGCTGTTGGCCTTGTTGTCCCTGTCCAAGAAGAAAGACCAAAGGAGCCATCATCAACTGTCGTGGAAGAAAAATCTTTGGATGGGGATGGCCAGACATCTTGTCAAATTGAGCCAGTGGATGCCCCCCAACCTGCTATTGCAGTCAGTGATGATTGTGTGGATCGTGCTCTTGCAGTATGGAGCAGGACAAGAGATGAGACTGATAATGATGATGATCCTGACTCAAAAAGACAGAAGAAAGACATTAATAATGTCGATGCCACTCCGACCGATAAGCCAAGTGGTGAACCGCGCATTGTTGTTCAGACTGTGAGTGAGGTAGATATTGTGAATGATGGGTACCGCTGGCGGAAATATGGTCAGAAATTAGTGAAAGGCAATACAAATCCAAGGAGTTATTACAGGTGCTCAAATGCAGGATGTCCAGTAAAAAAGCATGTGGAGAGGGCATCTCATGATCCAAAAATGGTTATAACCACATATGAAGGACAACACGACCATGATATGCCTCCAGCAAGGACAGTTACCCATAATTCAGCAGGACCCAATACCACTACAACAGATGTGAATGACGAATCAAGAGCTAAATCAGAACAAAGCGACAATGTTGGCCTTGCAATAGTGCCCTATATATGTTTGGGGCCTGAGAATAATAAATCAAACGATCAACAAACTCCAAGTGCAGAACCTGTCCAGACCTAA 1095 42.47 MKVPTTSDFGTLVQVQDQFEWQSFTYDLNDVDSNKLQQRQIPDTGVHASQSHQEAIMPSIIPEKASEDGYNWRKYGQKHVKGNEFIRSYYRCTHPNCQVKKQLERSHDGQITDIIYFGKHDHPKLQVDLPLAVGLVVPVQEERPKEPSSTVVEEKSLDGDGQTSCQIEPVDAPQPAIAVSDDCVDRALAVWSRTRDETDNDDDPDSKRQKKDINNVDATPTDKPSGEPRIVVQTVSEVDIVNDGYRWRKYGQKLVKGNTNPRSYYRCSNAGCPVKKHVERASHDPKMVITTYEGQHDHDMPPARTVTHNSAGPNTTTTDVNDESRAKSEQSDNVGLAIVPYICLGPENNKSNDQQTPSAEPVQT* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9116730 9122807 + Vvi12g673 Vvi12g673 773196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g673 364 MobiDBLite consensus disorder prediction 347 364 - -
Vvi12g673 364 PANTHER WRKY TRANSCRIPTION FACTOR 1 17 353 - -
Vvi12g673 364 SMART WRKY_cls 66 124 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 SMART WRKY_cls 241 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 MobiDBLite consensus disorder prediction 307 321 - -
Vvi12g673 364 SUPERFAMILY WRKY DNA-binding domain 233 301 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 SUPERFAMILY WRKY DNA-binding domain 63 124 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 ProSiteProfiles WRKY domain profile. 236 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 Gene3D WRKY domain 228 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 MobiDBLite consensus disorder prediction 194 217 - -
Vvi12g673 364 Gene3D WRKY domain 54 124 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 MobiDBLite consensus disorder prediction 155 169 - -
Vvi12g673 364 MobiDBLite consensus disorder prediction 194 229 - -
Vvi12g673 364 MobiDBLite consensus disorder prediction 140 172 - -
Vvi12g673 364 Pfam WRKY DNA -binding domain 242 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 Pfam WRKY DNA -binding domain 67 123 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 ProSiteProfiles WRKY domain profile. 61 125 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g673 364 MobiDBLite consensus disorder prediction 304 364 - -
Vvi12g673 364 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 353 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g673 Vvi19g612 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13824 PF03106 WRKY 3.00E-26 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g673 - K18834 vvi:100256306 692.575