Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g674 ATGCAAGCATCTCAGCAGCATAGAAGTTCAGGCATGTCTAACAGGTTGTATTACCTACCTCCGCAAGAGGCTGAGGCCCATTGCTTGCCTCAGTTCCAGAGTTTTGACCACCAGCTGTGCTACAACGATGGCAGCCAAGGAACCAACTTCTCCTTTCAGGGTTCCAGTGAGCGTTACTGTACTCTGGAGTCATCTCCCAACTCCCAGCAAGATTCTCAGTCGTATCCGTCTGATCCTCACCATTCCCCCGACAACACCTACGGCTCTCCTATGAGTGCATCCTGTATTACTGATGATGTAAGCGACCTGAAGCACAAGCTGAGAGAATTGGAGACTGTAATGCTGGGGCCTGATTCTGATATCATCAATAGCTATGACAATAATGATCTGCTGATGGCCCAATGGCTGATGGATGAGTTGCGGCAGATGGTGTCGGTCTCTGGTGAACCGATCCAAAGGCTGGGAGCTTACATGTTGGAAGGGCTTGTAGCACGGCTGGCCTCCTCCGGGAGTTCCATCTACAAAGCTCTGAGATGCAAAGAACCGGCCAGCGCTGACCTTCTCTCGTATATGCACATTCTGTATGAGGTCTGCCCCTACTTCAAGTTCGGATACATGTCTGCGAATGGTGCCATTGCAGAAGCCATGAAGGATGAAAACAGGGTTCATATTATCGACTTCCAGATTGGTCAGGGGAGCCAATGGATTACTCTAATCCAGGCCTTTTCAGCTCGGCCTGGGGGGCCACCCCACATCCGCATAACAGGTATCGACGATTCAACATCTGCTTATGCCCGTGGCGGGGGACTCAACATTGTGGGACAAAGGCTATCCAGGCTTGCTGAGTCAGTCAAAGTTCCATTCGAGTTCCATGCAGCAGACATGTCCGGCTGTGAAGTCCAGCTGGAAAATCTCGGGGCTCGACCAGGTGAAGCGTTGGCGGTGAATTTTGCCTTCATGCTGCATCACATGCCGGATGAGAGTGTCAGCACCCAGAATCACCGGGACAGGCTACTGAGGCTGGTCAAGAGCTTATCTCCCAAGGTGGTCACCCTCGTTGAGCAAGAATCAAACACAAATACCGCTGCATTCTTCCCCAGGTTCCTTGAGACATTGAATTATTATACAGCCATGTTCGAATCAATTGACGTGACTCTTCCAAGGGAGCATAAGAAGCGGATAAGCGTCGAGCAACACTGCCTGGCAAGGGATGTTGTTAACATAATCGCATGCGAGGGGGTTGAGAGGGTGGAGCGCCATGAACTTCTCGGAAAATGGAGGTTGAGGTTTGCAATGGCGGGGTTTACTCCATACCCATTAAGCTCCCTGGTGAACGCCACCATTAAAAGACTTCTAGAAAACTACAGTGACAAGTATAGGCTCGAGGAGAGGGAAGGAGCGCTCTATCTTGGCTGGATGGACAGAGATTTGGTTGCGTCGTGTGCGTGGAAGTAG 1455 50.93 MQASQQHRSSGMSNRLYYLPPQEAEAHCLPQFQSFDHQLCYNDGSQGTNFSFQGSSERYCTLESSPNSQQDSQSYPSDPHHSPDNTYGSPMSASCITDDVSDLKHKLRELETVMLGPDSDIINSYDNNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPASADLLSYMHILYEVCPYFKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWITLIQAFSARPGGPPHIRITGIDDSTSAYARGGGLNIVGQRLSRLAESVKVPFEFHAADMSGCEVQLENLGARPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETLNYYTAMFESIDVTLPREHKKRISVEQHCLARDVVNIIACEGVERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKRLLENYSDKYRLEEREGALYLGWMDRDLVASCAWK* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9122980 9126371 - Vvi12g674 Vvi12g674 773197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g674 484 Coils Coil 445 465 - -
Vvi12g674 484 MobiDBLite consensus disorder prediction 60 91 - -
Vvi12g674 484 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 126 484 - -
Vvi12g674 484 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 18 127 - -
Vvi12g674 484 Pfam GRAS domain family 123 484 IPR005202 -
Vvi12g674 484 ProSiteProfiles GRAS family profile. 101 484 IPR005202 -
Vvi12g674 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 126 484 IPR005202 -
Vvi12g674 484 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 18 127 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g674 Vvi19g614 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13825 PF03514 GRAS 1.60E-133 CL0063 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g674 - - vvi:100261403 931.013