Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g680 ATGCGCCGGACTGTTAAAAGCACCCCACAAAGCATATGGTATGGCCCAGACCGCCCCAAGTACTTGGGCCCATTCTCTGAGCAAACTCCATCATACCTGACCGGTGAATTCCCTGGTGACTATGGGTGGGACACTGCTGGGTTATCAGCAGATCCTGAGACATTCGCCAAGAACCGTGAGCTCGAGGTCATTCACTGCAGATGGGCAATGCTTGGTGCACTGGGTTGTGTCTTCCCTGAGATTCTTTCAAAGAATGGTGTCAAATTTGGTGAGGCTGTCTGCATCCTTGCAATCTGGGCCTGCCAAGTTGTGCTCATGGGATTCGTTGAAGGATACCGTGTTGAACTGAAGGTGAAGGAGATCAAGAACGGTCGCCTGGCAATGTTTTCAATGTTTGGATTCTTCGTTCAGGCTATTGTCACTGGAAAGGGCCCAATTGAGAACCTCGTTGACCACCTTGCTGATCCAGTTGCCAACAACGCATGGGCTTATGCCACCAACTTTGTCCCCGGCAAGTGA 519 51.06 MRRTVKSTPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVCILAIWACQVVLMGFVEGYRVELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLVDHLADPVANNAWAYATNFVPGK* 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9272132 9273934 + Vvi12g680 Vvi12g680 773203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g680 172 Pfam Chlorophyll A-B binding protein 115 138 IPR022796 -
Vvi12g680 172 Pfam Chlorophyll A-B binding protein 30 114 IPR022796 -
Vvi12g680 172 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 93 114 IPR001344 GO:0009765|GO:0016020
Vvi12g680 172 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 93 IPR001344 GO:0009765|GO:0016020
Vvi12g680 172 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 115 172 IPR001344 GO:0009765|GO:0016020
Vvi12g680 172 Gene3D Chlorophyll a/b binding protein domain 113 165 - -
Vvi12g680 172 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 115 172 - -
Vvi12g680 172 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 93 - -
Vvi12g680 172 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 93 114 - -
Vvi12g680 172 Gene3D Chlorophyll a/b binding protein domain 20 97 - -
Vvi12g680 172 SUPERFAMILY Chlorophyll a-b binding protein 12 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g680 Vvi19g298 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g680 K08913 - vvi:100254533 328.176