Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g685 ATGTCCTTGAATTGCAAGCTTTCTGGCTTTAGTGGCAGATTGCCGGCCAATTTGAAGCTGAAGAAGTCAAAGGAGCCTTTGCATGGGTCTAATTGTGTCAGGAAATGGAGGAGAAAGTTTCTGTTATTGTGGCTTTTAGGAGTTATTATTGGCCTCATTTGTTTTCTCTCAGTTTTGAATGCTGGGGCTTTGAGTAGGAAGGAGAAGACTCCAGACTTGTGTGAAGAAAAAGCTCGAATCTTGCTAGAGCATTTCAATGTCAGCAAGAACCAGCTTCATTCTTTGGCTTCTTTATTCGCTGAATCAGATCAGATAGCGTCCTTGGAATGTACCAAAGAAGCAGGATTTGAAATGCCACCAGGCAATGCTATTGCCTGTGCACTTAAGGTACCATGTTCACAGAATCAAGAGTTTGAGAAGCAGCATGATCAGGCTGCAGAAAGTTTAGAACCTAATGACCAATGCCCAGTTCGAGATGAGAACATCCCTGGAAAGCTTGACCTATCTTTGCTAGGGGACCAATCTGCATCATTTAGTTCGCAGTCTACGTCTTCATCAGTTTCGCTTGATGGTCAGAGTGGTGAAAAGATTAGGGCTCTGGCGAACTGTACAAAAGAGCACTGTGAGAATTTTTCTCTCTGTTTGGTAAAAGTTGGTTGGTGGGTCCTTGTTGGAATGGTTGTGAGCTGCAAGTTGTCTGGTTCTCATGTGAAACTGTGGGGGAATCGGAAGCAGAAACTGGTTGAGCAGCAGAAGCTGGTTGAGCAGCAGTCACAGGTTCAGCAGCAGCGGCAGTTGCGGCCGAAGCAGCAACAGCCGGCCCAGAGTTCATCTAAAGTTGCTGGGAAGTGGAGGAAGAAGCTCCTAATAATATTTGTCTTACTTGGGGTGATTATATCTATTTGGTTATTTTGGCACTTGAATAAGGATATTAACTTGAGAAGAAGGGAAACACTTACCAATATGTGCGATGAACGAGCCCGGATGTTGCAGGATCAGTTCAATGTGAGCATGAATCATGTGCATGCATTGGCTATTCTTGTTTCAACCTTTCACCATGGAAAACACCCTTCTGCTATTGATCAGAAAACATTTGGAGAATATACCGAGAGAACGGCTTTTGAGAGGCCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTTCACTCAGAAAGAGAACACTTTGAAAAGGAACATGGATGGACAATAAAGAAAATGGAAACTGAGGACCAGACTCTAGTCCAAGATTGTATTCTGGAAAATTTAGATCCATCACCCATTCAAGATGAATATGCACCCGTCATATTTTCTCAAGAAACAGTTTCTCATATAGTATCTATTGACATGATGTCTGGAAAGGAAGACCGTGAGAACATCTTGCGAGCTAGGGCATCTGGAAAGGGAGTATTGACATCTCCTTTTAAGCTACTGAAATCCAATCACTTGGGTGTTGTACTCACATTTGCTGTCTATAACGCTGACCTACCTCCAGATGCTACACCAGAGCAACGTATTGAAGCTACTGTAGGGTATCTAGGTGCGTCTTATGATGTCCCATCACTAGTGAAGAAGCTTCTACACCAACTTGCCAGCAAGCAGACGATAGTTGTGAATGTTTATGATACAACTAATGCATCTGCACCCATCAATATGTATGGTACTAATGTTACAGATACGGGCCTATTGCGCATTAGCAACCTTGATTTTGGGGATCCAGCTCGGAAGCATGAGATGCACTGCAGGTTCAAGCAGAAGCCTCCTCCACCTTGGACAGCAATAACGGCATCAGTTGGGGTCTTAGTTATTACTTTGCTTGTGGGCCATATTTTTCATGCTGCCATAAACCGAATCGCAAAAGTGGAGGGTGATTATCGTCAGATGATGGAACTCAAAGTTCGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCCCACGAAATCAGGACTCCGATGAATGGTGTTTTAGGTATGCTGAAAATGCTGATGGACTCGGGTCTTGATGCAAACCAACAGGATTATGCTGAGACTGCTCATGCTAGTGGGAAAGATCTAATATCACTGATAAATGAGGTTCTTGATCAGGCTAAGATAGAATCAGGAAGGCTCGAGCTTGAAGCTGTTCCTTTTGATTTGCGTGCTGCTCTTGATAATGTTTTATCACTCTTCTCAGGCAAATCTCATGAAAAGGGGATCGAGTTGGCTGTCTACATCTCTGATCAAGTGCCTGAATTTGTCATTGGAGACCCCGGGCGCTTCAGGCAGATAATTACCAATCTTGTTGGAAATTCAATAAAGTTCACACATGACAAAGGGCATATCTTTGTCTCGGTGCATCTGGCAGATGAAGTGAAGTTTAAAAAGTTAAGCTGCACAGATTCAATGGAGGAAACCAGCATAATTAAATTATTAGTGACTGTCGAGGATACGGGTGTGGGAATACCTTCAGAAGCTCAAAGTCGAATTTTCATGCCTTTTATGCAGGCTGACAGTTCCACTTCTCGAACGTATGGTGGGACTGGAATAGGATTAAGCATTAGCAAGCGTTTGGTGGATCTTATGGGTGGGGAAATTGGGTTTGAGAGTGAACCCGGCACTGGAAGTACCTTCTCATTTACTGTGGCTTTCACAAAAGGAGAAACTAGTTTACTAGATACAAAGCAGCAACCTCATGATCCAGCTGGTTCTGAGTTCCAAGAATTGAGAGCCTTGGTGGTTGATTGTAGAAGCATCCGAGCTGAGGTTACAAGATATCATCTTCAGAGATTGGGCATATCAGTCGATAAAACTTTCAGCCTAATATCTGCATGCTCTTATCTGTCCAATAATTCCGATCCAAGTGCATCAACTAGTGTAGCTATGGTTCTGGTTGACAAAGAGGTTTGGGATAAGGAGGCTGGTCTTGTTTTCCATCATATGCTCAAAGAGCTCAGGCCAAATGGCACTGTGGAAGTCCAAGAAAAACGTCCAAAAATATTCCTTTTGGACACCTCTCTGAGCTCTGCTGAGCGCAATGAGCTCAAATCAGCTGGTTTTGTGGATAATGTACTAATGAAGCCTCTTCGGTTAAGCGTATTGATTTCTTGCTTCCAGGAAGTCTTTGGAATTGGCAAGAGAAAGCAAGCGAATAGAGGAAAACCATTAACTCTTGGGAATCTGTTAAGAGAAAAGCGAATCTTGGTGGTGGATGACAATGCTGTTAACCGAAGGGTGGCAGAATTTGCTCTCAAGAAGTATGGAGCAATTGTCACCTGCGTGGACAGTGGCAAGGCTGCTCTTTTGATGCTTAAGCCACCCCATAACTTTGATGCTTGCTTCATGGATCTCCAAATGCCAGAGATGGATGGGTTTAGAGCAACACAGGAAATCCGCCGAATGGAGAGCAAGGTTAATGAGAGAATTAAATCTGGAGAAGTATCAATAGAGATGTTTGCAAATGTGGCTTATTGGCACACACCAATTTTAGCAATGACTGCTGATGTTATTCAGGCAAATAATGAAGAGTGCATGAAGTGTGGAATGGATGGTTATGTGGCAAAGCCATTCGAAGAAGATCAGCTTTATTCAGCAGTGGCACATTTCTTTGAGTCTGGTTAA 3612 43.24 MSLNCKLSGFSGRLPANLKLKKSKEPLHGSNCVRKWRRKFLLLWLLGVIIGLICFLSVLNAGALSRKEKTPDLCEEKARILLEHFNVSKNQLHSLASLFAESDQIASLECTKEAGFEMPPGNAIACALKVPCSQNQEFEKQHDQAAESLEPNDQCPVRDENIPGKLDLSLLGDQSASFSSQSTSSSVSLDGQSGEKIRALANCTKEHCENFSLCLVKVGWWVLVGMVVSCKLSGSHVKLWGNRKQKLVEQQKLVEQQSQVQQQRQLRPKQQQPAQSSSKVAGKWRKKLLIIFVLLGVIISIWLFWHLNKDINLRRRETLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFGEYTERTAFERPLTSGVAYALKVLHSEREHFEKEHGWTIKKMETEDQTLVQDCILENLDPSPIQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNADLPPDATPEQRIEATVGYLGASYDVPSLVKKLLHQLASKQTIVVNVYDTTNASAPINMYGTNVTDTGLLRISNLDFGDPARKHEMHCRFKQKPPPPWTAITASVGVLVITLLVGHIFHAAINRIAKVEGDYRQMMELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKDLISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPEFVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVKFKKLSCTDSMEETSIIKLLVTVEDTGVGIPSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESEPGTGSTFSFTVAFTKGETSLLDTKQQPHDPAGSEFQELRALVVDCRSIRAEVTRYHLQRLGISVDKTFSLISACSYLSNNSDPSASTSVAMVLVDKEVWDKEAGLVFHHMLKELRPNGTVEVQEKRPKIFLLDTSLSSAERNELKSAGFVDNVLMKPLRLSVLISCFQEVFGIGKRKQANRGKPLTLGNLLREKRILVVDDNAVNRRVAEFALKKYGAIVTCVDSGKAALLMLKPPHNFDACFMDLQMPEMDGFRATQEIRRMESKVNERIKSGEVSIEMFANVAYWHTPILAMTADVIQANNEECMKCGMDGYVAKPFEEDQLYSAVAHFFESG* 1204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9316913 9325218 + Vvi12g685 Vvi12g685 773208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g685 1203 CDD HisKA 641 702 IPR003661 GO:0000155|GO:0007165
Vvi12g685 1203 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 158 - -
Vvi12g685 1203 PANTHER TWO-COMPONENT HISTIDINE KINASE 269 793 - -
Vvi12g685 1203 PANTHER TWO-COMPONENT HISTIDINE KINASE 791 1202 - -
Vvi12g685 1203 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 627 707 IPR036097 GO:0000155|GO:0007165
Vvi12g685 1203 SMART REC_2 1062 1196 IPR001789 GO:0000160
Vvi12g685 1203 SMART CHASE_2 356 555 IPR006189 -
Vvi12g685 1203 Gene3D - 61 103 - -
Vvi12g685 1203 Gene3D - 307 359 - -
Vvi12g685 1203 PRINTS Bacterial sensor protein C-terminal signature 808 822 IPR004358 GO:0016310|GO:0016772
Vvi12g685 1203 PRINTS Bacterial sensor protein C-terminal signature 826 836 IPR004358 GO:0016310|GO:0016772
Vvi12g685 1203 PRINTS Bacterial sensor protein C-terminal signature 843 861 IPR004358 GO:0016310|GO:0016772
Vvi12g685 1203 PRINTS Bacterial sensor protein C-terminal signature 867 880 IPR004358 GO:0016310|GO:0016772
Vvi12g685 1203 SUPERFAMILY CheY-like 1060 1200 IPR011006 -
Vvi12g685 1203 Gene3D - 900 1041 - -
Vvi12g685 1203 Gene3D - 1057 1202 - -
Vvi12g685 1203 SUPERFAMILY CheY-like 903 1040 IPR011006 -
Vvi12g685 1203 Gene3D CHASE domain 360 587 IPR042240 -
Vvi12g685 1203 SMART HisKA_10 641 706 IPR003661 GO:0000155|GO:0007165
Vvi12g685 1203 Gene3D - 705 885 IPR036890 -
Vvi12g685 1203 Pfam Response regulator receiver domain 1064 1196 IPR001789 GO:0000160
Vvi12g685 1203 CDD REC_hyHK_CKI1_RcsC-like 1064 1196 - -
Vvi12g685 1203 Pfam His Kinase A (phospho-acceptor) domain 641 706 IPR003661 GO:0000155|GO:0007165
Vvi12g685 1203 SMART HKATPase_4 753 883 IPR003594 -
Vvi12g685 1203 Gene3D - 610 704 - -
Vvi12g685 1203 ProSiteProfiles Histidine kinase domain profile. 648 883 IPR005467 -
Vvi12g685 1203 ProSiteProfiles Response regulatory domain profile. 1063 1200 IPR001789 GO:0000160
Vvi12g685 1203 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 753 882 IPR003594 -
Vvi12g685 1203 MobiDBLite consensus disorder prediction 259 278 - -
Vvi12g685 1203 CDD HATPase_EvgS-ArcB-TorS-like 758 879 - -
Vvi12g685 1203 PANTHER HISTIDINE KINASE 2 27 158 - -
Vvi12g685 1203 PANTHER HISTIDINE KINASE 2 269 793 - -
Vvi12g685 1203 PANTHER HISTIDINE KINASE 2 791 1202 - -
Vvi12g685 1203 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 695 879 IPR036890 -
Vvi12g685 1203 ProSiteProfiles CHASE domain profile. 356 580 IPR006189 -
Vvi12g685 1203 ProSiteProfiles Response regulatory domain profile. 907 1039 IPR001789 GO:0000160
Vvi12g685 1203 Pfam CHASE domain 359 553 IPR006189 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13826 PF03924 CHASE 5.60E-35 CL0165 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g685 K14489 - vvi:100263145 2257.26