Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g7 ATGCTACCACCTTCAAGAAGAGACTTTAAAGATATTTACGTCGTTTTTGAACTTATGGAGTCGGATCTACACCAAGTCATCAAAGCTAATGATGATTTGACGAGAGAGCACTATCAATTTTTTCTTTACCAATTGCTACGGGCATTGAAGTACATTCACACAGCAAATGTCTATCACCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGTAAACTCAAAATATGTGATTTTGGGTTAGCAAGAGTTGCATTCAGTGATACACCTACAACAATATTTTGGACGGATTATGTTGCTACAAGATGGTATAGAGCTCCAGAGTTATGTGGATCATTTTTCTCCAAGTATACACCTGCGATTGATATATGGAGTATAGGCTGCATTTTTGCTGAGGTATTAACAGGGAAGCCATTATTTCCTGGAAAAAATGTTGTGCACCAGCTGGATTTGATGACTGATCTGCTTGGGACACCATCTTTAGATACCATTTCTCGGGTTCGAAATGAGAAGGCAAGGCGATACCTTACTAGCATGAGGAAGAAGCAGCCTGTAATATTTGCACAGAAGTTTCCAAATGCTGATCCTTTGGCACTACGGCTATTGGAAAGGCTTCTTGCTTTTGATCCAAAGGATCGGCCAACTGCTGAAGAGGCATTGGCTGATCCCTACTTTAAGGGTCTGGCAAAGGTTGAGAGGGAACCTTCTTGCCAACCAATTACAAAGATGGAATTTGAGTTTGAGAGGAGAAGGGTTACAAAGGAGGACATACGGGAGCTAATTTTCCGGGAGATACTAGAATACCATCCTCAACTACTCAAAGACTACGTGAATGGAACTGAAAGGACTAATTTTCTCTATCCAAGTGCTGTTGATCAATTCAGAAAGCAATTTGCACATCTAGAGGAAAACAGTGGTAAAACTGGGCCAGTAATTCCACTTGAGAGAAAGCATGTGTCACTTCCCAGGTCTACTGTTGTACATTCAAATACAATCCCTGCAAAAGAACCACATATCATAGCCTTCAAGGATCGTCAAATTGCAGAAGAGTCATGCAGTAGGAGTTCTAGAGACACAGATGGAATTCCTGGAAATCTGTCAAGGAGCTTGCAGGCATCCCAACGGATCCCAATGGCCAAACCAGGAAAGGTTGTGGGGCCATTGGCACCACCCGAGAATGGAAGTGCCATTAAAGATGCATATGATCACAGGACATTAATCAGAAATGCAGTCCTTCCTTCCCAGGCTCTTCCTCCTGCGTATTGTTATCGCAGAACTAGTGCAGGAAAGCAAGAAAGATACATAGCCATCAATATTGACACCAATCCATTCTATATGACAAGGGCGGGAGTGACCAAGGTGGACCATGTTGATGACCGAATTACTATTGATGCAAACTTGCTGCAAGCCAAAGCTCAGTTCGGTGGGATTGGTGCTGCTGCTGCAGCGGCTGCAACAGCGGCTGCTCACAGAAAAGTTGGGACAGTTCAGTTTGGTATGTCAAGAATGTATTAG 1518 42.69 MLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVIFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYVNGTERTNFLYPSAVDQFRKQFAHLEENSGKTGPVIPLERKHVSLPRSTVVHSNTIPAKEPHIIAFKDRQIAEESCSRSSRDTDGIPGNLSRSLQASQRIPMAKPGKVVGPLAPPENGSAIKDAYDHRTLIRNAVLPSQALPPAYCYRRTSAGKQERYIAINIDTNPFYMTRAGVTKVDHVDDRITIDANLLQAKAQFGGIGAAAAAAATAAAHRKVGTVQFGMSRMY* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 124451 133238 + Vvi12g7 Vvi12g7 772530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g7 505 Gene3D Transferase(Phosphotransferase) domain 1 21 249 - -
Vvi12g7 505 ProSiteProfiles Protein kinase domain profile. 1 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g7 505 Pfam Protein kinase domain 8 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g7 505 Gene3D Phosphorylase Kinase; domain 1 1 272 - -
Vvi12g7 505 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 401 - -
Vvi12g7 505 SMART serkin_6 5 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g7 505 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 401 - -
Vvi12g7 505 SUPERFAMILY Protein kinase-like (PK-like) 9 230 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76130 PF00069 Pkinase 5.80E-50 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g7 - - vvi:100252272 957.977