Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g703 ATGTCCTCAAAGTCTACTAACAAGACGAATTGTTCTAGGAGCAGCTCTGCTCGATCAAAACATGGCGCCCGTGTGGTGGCACAGACCCCAATTGATGCCCAGCTTCATGTGAACTTTGAGGAGTCTGAACGTCATTTTGATTACTCTGCTTCAGTTGACTTCAATATCTCAAGTTCCACTAGTGATGTCCCCTCTTCTACGGTCTCAGCTTACCTCCAAAAGATGCAGAGGGGAAACCTGATCCAACCATTTGGCTGCATGATTGCAGTTGATGAGCAGAATCTCACAGTTCTTGCCTACAGCGAAAATGCCCCTGAAATGTTGGACTTAGCCCCACATGCTCCCTTCTATGCAATTCTGCACCGAATTGATGTAGGGTTAATTATAGATTTGGAGCCAGTGAATCCAGCTGATGTCCCAGTTACAGCGGCTGGGGCATTAAAGTCATATAAGCTTGCTGCCAAAGCCATTTCAAGATTGCAATCTTTGCCAAGTGGGAATATATCACTGTTATGTGACGTGTTAGTCAAGGAAGCGAGTGAATTAACGGGTTATGATCGAGTGATGGTGTATAAATTTCATGAGGATGAGCATGGGGAAGTTATTGCAGACCTCTGTGGATCCACATTGAGATCTCCTCATGGGTGTCATGCACAGTACATGGCGAATATGGGTTCGGTTGCATCGCTTGTGATGTCTGTGACCATCAATGAGGAAGATGATGATACAGAGAGTGAGCAACAAAAGGGAAGAAAATTGTGGGGCTTGGTGGTTTGCCATAATACAAGCCCTAGGTTTGTTCCGTTCCCTTTGAGGTATGCCTGTGAGTTTTTGGTTCAAGTTTTTGGTGTACAAATTAGCAAGGAAATGGAGCTAGCTGCCCAAATGAAGGAGAAGCATATTTTGCAGACACAAACCGTGCTTTGCGACATGCTCCTTAGAGATGCACCTGTAGGAATTGTTACTCAATCACCCAATGTGATGGACCTGGTTAGGTGTGATGGAGCTGCGCTCTACTACCAGAAGAAATTTTGGTTGCTTGGGGTCACCCCTACAGAGGCACAGATTAGAGATATAGTTGAGTGGCTTCTTGAGTACCACAGTGGGAGTACAGGCTTAAGTACTGATAGCCTGATGGAAGCTGGCTACCCAGCTGCCTCAGTTCTTGGTGATGCAGTTTGTGGGATTGCTGCCGTTAAGATTAATTCAAACGATTTCCTTTTTTGGTTCCGGTCCCACACGGCAAAGGAGATTAAGTGGGCTTCTGTTCCCATCCTGGCTGTTGATGCCGCTGGTTGCATAAATGGGTGGAATAACAAAGCGGCCGAGCTAACAGGATTGATCATGCAGCAAGCCATTGGCATGCCCTTAATTAATCTTGTTGAGAATGATTCAGCCGACATGGTGAAGAAGATGCTCTCCATGGCATTGCAAGGTATAGAAGAGCAAAATGTTGAGATCAAACTCAAGACATTTGGTCCCCAGGAAAACAATGGCCCTGTTATATTGGTAGTTAATGCATGTTGTAGCCGAGACATAAAGGATAATGTCGTAGGGGTTTGCTTCGTTGGGCAAGATATCACAGGGCAAAAGATGGTTATGGACAAATATACTCGTATCCAAGGTGATTATGTTGGAATTGTGCGGAACCCATCTGCACTAATTCCTCCCATTTTTATGATGGACGAGCATGGTCGATGCTTGGAATGGAATGATGCAATGCAAAACTTGTCTGGTCTGAAGAGAGAAGAAGCCACTGATAGGATGCTTCTCGGGGAGGTTTTTACGGTCAATAATTTTGGTTGTCAGGTTAAAGATCATGACACATTAACCAAGCTCAGGATATTACTAAATGGAGCCATTGCAGGTCAGGATGCACAGAAATTGTTATTTGGGTTCTTTGATCAGCACGGTAAATACATTGAAGCATTACTTTCTGCAAACAAAAGGACTGATGCAGAGGGAAAGATCACTGGGGTTTTGTGTTTTTTGCACGTGGCTAGTCCTGAACTTCAACACGCCATGCAGGTGCAGAGAATATCGGAACAGGCTGCAGCTGATAGCCTCAAGAAATTGGCATATATTCGTCAGCAGATCAGGAAGCCTTTAAATGGAATAATGTTCATTCAGAATCTGATGGACTCATCTGAGCTAAGTCAAGACCAGAAAAAATTCCTGAGGACAAGCATGATGTGTCAAGAACAATTAACAAAGATCGTTGATGACACTGATCTCGAGAGCATTGAGGAATGCTATATGGAATTGAATTCTGGTGAGTTTAACCTAGGGGAAGTTTTGGAGGTTGTCATAAGTCAAGCGATGATTCTGAGCCGGGAGCGTCGGGTGGAGATCATCTATGATTCACCTGCTGAAGTGTCGTCCATGCTTTTGTATGGTGACAACTTGAGGCTTCAACAAGTCCTTTCAGATTTCTTAACAAATGCGCTTCTCTTCACCCCTGCATTTGAAGGATCATCAGTTGCACTCAGAGTAATTCCAAGAAGGGAGTGTATAGGGACAAAGGTTCACATTGTACATCTTGAATTTCGGATTGCCCATCCAGCACCTGGGATCCCAGAAGACTTGATCCAACAGATGTTTCACCACAGCCAGGGTGTATCAAGGGAAGGTCTTGGCCTATACATCAACCAAAAGCTTGTGAAGATCATGAACGGCACGGTTCAGTATCTCAGAGAGGCACAGGGATCATCCTTCATCATTCTCATAGAGTTCCCATTGGCTCACTAG 2748 44.65 MSSKSTNKTNCSRSSSARSKHGARVVAQTPIDAQLHVNFEESERHFDYSASVDFNISSSTSDVPSSTVSAYLQKMQRGNLIQPFGCMIAVDEQNLTVLAYSENAPEMLDLAPHAPFYAILHRIDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVKEASELTGYDRVMVYKFHEDEHGEVIADLCGSTLRSPHGCHAQYMANMGSVASLVMSVTINEEDDDTESEQQKGRKLWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKEMELAAQMKEKHILQTQTVLCDMLLRDAPVGIVTQSPNVMDLVRCDGAALYYQKKFWLLGVTPTEAQIRDIVEWLLEYHSGSTGLSTDSLMEAGYPAASVLGDAVCGIAAVKINSNDFLFWFRSHTAKEIKWASVPILAVDAAGCINGWNNKAAELTGLIMQQAIGMPLINLVENDSADMVKKMLSMALQGIEEQNVEIKLKTFGPQENNGPVILVVNACCSRDIKDNVVGVCFVGQDITGQKMVMDKYTRIQGDYVGIVRNPSALIPPIFMMDEHGRCLEWNDAMQNLSGLKREEATDRMLLGEVFTVNNFGCQVKDHDTLTKLRILLNGAIAGQDAQKLLFGFFDQHGKYIEALLSANKRTDAEGKITGVLCFLHVASPELQHAMQVQRISEQAAADSLKKLAYIRQQIRKPLNGIMFIQNLMDSSELSQDQKKFLRTSMMCQEQLTKIVDDTDLESIEECYMELNSGEFNLGEVLEVVISQAMILSRERRVEIIYDSPAEVSSMLLYGDNLRLQQVLSDFLTNALLFTPAFEGSSVALRVIPRRECIGTKVHIVHLEFRIAHPAPGIPEDLIQQMFHHSQGVSREGLGLYINQKLVKIMNGTVQYLREAQGSSFIILIEFPLAH* 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9664310 9670124 - Vvi12g703 Vvi12g703 773226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g703 915 ProSiteProfiles PAS repeat profile. 552 595 IPR000014 -
Vvi12g703 915 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 754 910 IPR036890 -
Vvi12g703 915 PANTHER PHYTOCHROME C 205 422 - -
Vvi12g703 915 PANTHER PHYTOCHROME C 424 914 - -
Vvi12g703 915 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 799 910 IPR003594 -
Vvi12g703 915 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 167 280 IPR016132 -
Vvi12g703 915 ProSiteProfiles PAS repeat profile. 424 480 IPR000014 -
Vvi12g703 915 ProSitePatterns Phytochrome chromophore attachment site signature. 211 220 IPR013516 -
Vvi12g703 915 Gene3D - 299 427 IPR043150 -
Vvi12g703 915 CDD HisKA 692 742 IPR003661 GO:0000155|GO:0007165
Vvi12g703 915 TIGRFAM sensory_box: PAS domain S-box protein 423 533 IPR000014 -
Vvi12g703 915 SMART HKATPase_4 799 915 IPR003594 -
Vvi12g703 915 Gene3D PAS domain 556 666 - -
Vvi12g703 915 ProSiteProfiles PAC domain profile. 483 539 IPR000700 -
Vvi12g703 915 MobiDBLite consensus disorder prediction 1 22 - -
Vvi12g703 915 Pfam PAS fold 70 111 IPR013654 GO:0006355
Vvi12g703 915 Pfam PAS fold 113 134 IPR013654 GO:0006355
Vvi12g703 915 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 114 - -
Vvi12g703 915 PANTHER TWO-COMPONENT HISTIDINE KINASE 115 205 - -
Vvi12g703 915 SUPERFAMILY GAF domain-like 147 287 - -
Vvi12g703 915 MobiDBLite consensus disorder prediction 1 25 - -
Vvi12g703 915 PANTHER TWO-COMPONENT HISTIDINE KINASE 424 914 - -
Vvi12g703 915 SMART pas_2 412 478 IPR000014 -
Vvi12g703 915 SMART pas_2 542 612 IPR000014 -
Vvi12g703 915 Gene3D PAS domain 428 539 - -
Vvi12g703 915 PANTHER TWO-COMPONENT HISTIDINE KINASE 205 422 - -
Vvi12g703 915 Gene3D - 752 914 IPR036890 -
Vvi12g703 915 CDD HATPase_Phy-like 798 911 IPR044767 -
Vvi12g703 915 PRINTS Phytochrome signature 182 201 IPR001294 GO:0006355|GO:0009584
Vvi12g703 915 PRINTS Phytochrome signature 565 580 IPR001294 GO:0006355|GO:0009584
Vvi12g703 915 PRINTS Phytochrome signature 546 562 IPR001294 GO:0006355|GO:0009584
Vvi12g703 915 ProSiteProfiles Histidine kinase domain profile. 694 915 IPR005467 -
Vvi12g703 915 CDD PAS 554 665 IPR000014 -
Vvi12g703 915 SUPERFAMILY PYP-like sensor domain (PAS domain) 557 662 IPR035965 -
Vvi12g703 915 Gene3D - 667 749 - -
Vvi12g703 915 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 136 IPR035965 -
Vvi12g703 915 SUPERFAMILY GAF domain-like 298 422 - -
Vvi12g703 915 SMART gaf_1 167 300 IPR003018 GO:0005515
Vvi12g703 915 Gene3D PAS domain 75 115 - -
Vvi12g703 915 Gene3D - 212 298 IPR029016 -
Vvi12g703 915 Gene3D - 146 211 IPR029016 -
Vvi12g703 915 PANTHER PHYTOCHROME C 1 114 - -
Vvi12g703 915 PANTHER PHYTOCHROME C 115 205 - -
Vvi12g703 915 Pfam GAF domain 168 289 IPR003018 GO:0005515
Vvi12g703 915 Pfam PAS fold 543 665 IPR013767 GO:0006355
Vvi12g703 915 Pfam PAS fold 421 527 IPR013767 GO:0006355
Vvi12g703 915 SUPERFAMILY PYP-like sensor domain (PAS domain) 421 529 IPR035965 -
Vvi12g703 915 CDD PAS 421 527 IPR000014 -
Vvi12g703 915 Pfam Phytochrome region 303 425 IPR013515 GO:0006355|GO:0009584
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g703 - - - vvi:100258014 977.237
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g1138 . 5 1168 Histidine Kinase Gene Family AT2G17820 67.1 0.0e+00 1484.2
Vvi1g534 . 1 839 Histidine Kinase Gene Family AT2G01830 70.4 0.0e+00 1194.1
Vvi1g1264 . 87 1035 Histidine Kinase Gene Family AT2G01830 54.9 4.3e-282 968.0
Vvi12g685 . 287 1201 Histidine Kinase Gene Family AT2G01830 53.8 3.3e-274 941.8
Vvi4g656 . 1 802 Histidine Kinase Gene Family AT5G10720 56.3 1.4e-273 939.5
Vvi14g7 . 1 1120 Histidine Kinase Gene Family AT1G09570 81.7 0.0e+00 1856.3
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT1G09570 52.1 4.3e-256 881.7
Vvi5g63 . 13 922 Histidine Kinase Gene Family AT2G18790 67.2 0.0e+00 1356.3
Vvi14g7 . 7 1054 Histidine Kinase Gene Family AT2G18790 52.5 0.0e+00 1100.1
Vvi10g343 . 1 810 Histidine Kinase Gene Family AT2G18790 63.2 1.1e-304 1043.1
Vvi14g7 . 9 1114 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1149.0
Vvi12g703 . 10 913 Histidine Kinase Gene Family AT5G35840 53.7 0.0e+00 1117.4
Vvi5g63 . 6 974 Histidine Kinase Gene Family AT4G16250 64.3 0.0e+00 1377.1
Vvi14g7 . 14 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1148.7
Vvi10g343 . 1 862 Histidine Kinase Gene Family AT4G16250 61.3 0.0e+00 1079.7
Vvi10g343 . 1 863 Histidine Kinase Gene Family AT4G18130 66.6 0.0e+00 1158.3
Vvi5g63 . 46 979 Histidine Kinase Gene Family AT4G18130 52.2 4.3e-301 1031.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40