Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi12g703 | ATGTCCTCAAAGTCTACTAACAAGACGAATTGTTCTAGGAGCAGCTCTGCTCGATCAAAACATGGCGCCCGTGTGGTGGCACAGACCCCAATTGATGCCCAGCTTCATGTGAACTTTGAGGAGTCTGAACGTCATTTTGATTACTCTGCTTCAGTTGACTTCAATATCTCAAGTTCCACTAGTGATGTCCCCTCTTCTACGGTCTCAGCTTACCTCCAAAAGATGCAGAGGGGAAACCTGATCCAACCATTTGGCTGCATGATTGCAGTTGATGAGCAGAATCTCACAGTTCTTGCCTACAGCGAAAATGCCCCTGAAATGTTGGACTTAGCCCCACATGCTCCCTTCTATGCAATTCTGCACCGAATTGATGTAGGGTTAATTATAGATTTGGAGCCAGTGAATCCAGCTGATGTCCCAGTTACAGCGGCTGGGGCATTAAAGTCATATAAGCTTGCTGCCAAAGCCATTTCAAGATTGCAATCTTTGCCAAGTGGGAATATATCACTGTTATGTGACGTGTTAGTCAAGGAAGCGAGTGAATTAACGGGTTATGATCGAGTGATGGTGTATAAATTTCATGAGGATGAGCATGGGGAAGTTATTGCAGACCTCTGTGGATCCACATTGAGATCTCCTCATGGGTGTCATGCACAGTACATGGCGAATATGGGTTCGGTTGCATCGCTTGTGATGTCTGTGACCATCAATGAGGAAGATGATGATACAGAGAGTGAGCAACAAAAGGGAAGAAAATTGTGGGGCTTGGTGGTTTGCCATAATACAAGCCCTAGGTTTGTTCCGTTCCCTTTGAGGTATGCCTGTGAGTTTTTGGTTCAAGTTTTTGGTGTACAAATTAGCAAGGAAATGGAGCTAGCTGCCCAAATGAAGGAGAAGCATATTTTGCAGACACAAACCGTGCTTTGCGACATGCTCCTTAGAGATGCACCTGTAGGAATTGTTACTCAATCACCCAATGTGATGGACCTGGTTAGGTGTGATGGAGCTGCGCTCTACTACCAGAAGAAATTTTGGTTGCTTGGGGTCACCCCTACAGAGGCACAGATTAGAGATATAGTTGAGTGGCTTCTTGAGTACCACAGTGGGAGTACAGGCTTAAGTACTGATAGCCTGATGGAAGCTGGCTACCCAGCTGCCTCAGTTCTTGGTGATGCAGTTTGTGGGATTGCTGCCGTTAAGATTAATTCAAACGATTTCCTTTTTTGGTTCCGGTCCCACACGGCAAAGGAGATTAAGTGGGCTTCTGTTCCCATCCTGGCTGTTGATGCCGCTGGTTGCATAAATGGGTGGAATAACAAAGCGGCCGAGCTAACAGGATTGATCATGCAGCAAGCCATTGGCATGCCCTTAATTAATCTTGTTGAGAATGATTCAGCCGACATGGTGAAGAAGATGCTCTCCATGGCATTGCAAGGTATAGAAGAGCAAAATGTTGAGATCAAACTCAAGACATTTGGTCCCCAGGAAAACAATGGCCCTGTTATATTGGTAGTTAATGCATGTTGTAGCCGAGACATAAAGGATAATGTCGTAGGGGTTTGCTTCGTTGGGCAAGATATCACAGGGCAAAAGATGGTTATGGACAAATATACTCGTATCCAAGGTGATTATGTTGGAATTGTGCGGAACCCATCTGCACTAATTCCTCCCATTTTTATGATGGACGAGCATGGTCGATGCTTGGAATGGAATGATGCAATGCAAAACTTGTCTGGTCTGAAGAGAGAAGAAGCCACTGATAGGATGCTTCTCGGGGAGGTTTTTACGGTCAATAATTTTGGTTGTCAGGTTAAAGATCATGACACATTAACCAAGCTCAGGATATTACTAAATGGAGCCATTGCAGGTCAGGATGCACAGAAATTGTTATTTGGGTTCTTTGATCAGCACGGTAAATACATTGAAGCATTACTTTCTGCAAACAAAAGGACTGATGCAGAGGGAAAGATCACTGGGGTTTTGTGTTTTTTGCACGTGGCTAGTCCTGAACTTCAACACGCCATGCAGGTGCAGAGAATATCGGAACAGGCTGCAGCTGATAGCCTCAAGAAATTGGCATATATTCGTCAGCAGATCAGGAAGCCTTTAAATGGAATAATGTTCATTCAGAATCTGATGGACTCATCTGAGCTAAGTCAAGACCAGAAAAAATTCCTGAGGACAAGCATGATGTGTCAAGAACAATTAACAAAGATCGTTGATGACACTGATCTCGAGAGCATTGAGGAATGCTATATGGAATTGAATTCTGGTGAGTTTAACCTAGGGGAAGTTTTGGAGGTTGTCATAAGTCAAGCGATGATTCTGAGCCGGGAGCGTCGGGTGGAGATCATCTATGATTCACCTGCTGAAGTGTCGTCCATGCTTTTGTATGGTGACAACTTGAGGCTTCAACAAGTCCTTTCAGATTTCTTAACAAATGCGCTTCTCTTCACCCCTGCATTTGAAGGATCATCAGTTGCACTCAGAGTAATTCCAAGAAGGGAGTGTATAGGGACAAAGGTTCACATTGTACATCTTGAATTTCGGATTGCCCATCCAGCACCTGGGATCCCAGAAGACTTGATCCAACAGATGTTTCACCACAGCCAGGGTGTATCAAGGGAAGGTCTTGGCCTATACATCAACCAAAAGCTTGTGAAGATCATGAACGGCACGGTTCAGTATCTCAGAGAGGCACAGGGATCATCCTTCATCATTCTCATAGAGTTCCCATTGGCTCACTAG | 2748 | 44.65 | MSSKSTNKTNCSRSSSARSKHGARVVAQTPIDAQLHVNFEESERHFDYSASVDFNISSSTSDVPSSTVSAYLQKMQRGNLIQPFGCMIAVDEQNLTVLAYSENAPEMLDLAPHAPFYAILHRIDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVKEASELTGYDRVMVYKFHEDEHGEVIADLCGSTLRSPHGCHAQYMANMGSVASLVMSVTINEEDDDTESEQQKGRKLWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKEMELAAQMKEKHILQTQTVLCDMLLRDAPVGIVTQSPNVMDLVRCDGAALYYQKKFWLLGVTPTEAQIRDIVEWLLEYHSGSTGLSTDSLMEAGYPAASVLGDAVCGIAAVKINSNDFLFWFRSHTAKEIKWASVPILAVDAAGCINGWNNKAAELTGLIMQQAIGMPLINLVENDSADMVKKMLSMALQGIEEQNVEIKLKTFGPQENNGPVILVVNACCSRDIKDNVVGVCFVGQDITGQKMVMDKYTRIQGDYVGIVRNPSALIPPIFMMDEHGRCLEWNDAMQNLSGLKREEATDRMLLGEVFTVNNFGCQVKDHDTLTKLRILLNGAIAGQDAQKLLFGFFDQHGKYIEALLSANKRTDAEGKITGVLCFLHVASPELQHAMQVQRISEQAAADSLKKLAYIRQQIRKPLNGIMFIQNLMDSSELSQDQKKFLRTSMMCQEQLTKIVDDTDLESIEECYMELNSGEFNLGEVLEVVISQAMILSRERRVEIIYDSPAEVSSMLLYGDNLRLQQVLSDFLTNALLFTPAFEGSSVALRVIPRRECIGTKVHIVHLEFRIAHPAPGIPEDLIQQMFHHSQGVSREGLGLYINQKLVKIMNGTVQYLREAQGSSFIILIEFPLAH* | 916 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 9664310 | 9670124 | - | Vvi12g703 | Vvi12g703 | 773226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi12g703 | 915 | ProSiteProfiles | PAS repeat profile. | 552 | 595 | IPR000014 | - | |
| Vvi12g703 | 915 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 754 | 910 | IPR036890 | - | |
| Vvi12g703 | 915 | PANTHER | PHYTOCHROME C | 205 | 422 | - | - | |
| Vvi12g703 | 915 | PANTHER | PHYTOCHROME C | 424 | 914 | - | - | |
| Vvi12g703 | 915 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 799 | 910 | IPR003594 | - | |
| Vvi12g703 | 915 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 167 | 280 | IPR016132 | - | |
| Vvi12g703 | 915 | ProSiteProfiles | PAS repeat profile. | 424 | 480 | IPR000014 | - | |
| Vvi12g703 | 915 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 211 | 220 | IPR013516 | - | |
| Vvi12g703 | 915 | Gene3D | - | 299 | 427 | IPR043150 | - | |
| Vvi12g703 | 915 | CDD | HisKA | 692 | 742 | IPR003661 | GO:0000155|GO:0007165 | |
| Vvi12g703 | 915 | TIGRFAM | sensory_box: PAS domain S-box protein | 423 | 533 | IPR000014 | - | |
| Vvi12g703 | 915 | SMART | HKATPase_4 | 799 | 915 | IPR003594 | - | |
| Vvi12g703 | 915 | Gene3D | PAS domain | 556 | 666 | - | - | |
| Vvi12g703 | 915 | ProSiteProfiles | PAC domain profile. | 483 | 539 | IPR000700 | - | |
| Vvi12g703 | 915 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Vvi12g703 | 915 | Pfam | PAS fold | 70 | 111 | IPR013654 | GO:0006355 | |
| Vvi12g703 | 915 | Pfam | PAS fold | 113 | 134 | IPR013654 | GO:0006355 | |
| Vvi12g703 | 915 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 1 | 114 | - | - | |
| Vvi12g703 | 915 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 115 | 205 | - | - | |
| Vvi12g703 | 915 | SUPERFAMILY | GAF domain-like | 147 | 287 | - | - | |
| Vvi12g703 | 915 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Vvi12g703 | 915 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 424 | 914 | - | - | |
| Vvi12g703 | 915 | SMART | pas_2 | 412 | 478 | IPR000014 | - | |
| Vvi12g703 | 915 | SMART | pas_2 | 542 | 612 | IPR000014 | - | |
| Vvi12g703 | 915 | Gene3D | PAS domain | 428 | 539 | - | - | |
| Vvi12g703 | 915 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 205 | 422 | - | - | |
| Vvi12g703 | 915 | Gene3D | - | 752 | 914 | IPR036890 | - | |
| Vvi12g703 | 915 | CDD | HATPase_Phy-like | 798 | 911 | IPR044767 | - | |
| Vvi12g703 | 915 | PRINTS | Phytochrome signature | 182 | 201 | IPR001294 | GO:0006355|GO:0009584 | |
| Vvi12g703 | 915 | PRINTS | Phytochrome signature | 565 | 580 | IPR001294 | GO:0006355|GO:0009584 | |
| Vvi12g703 | 915 | PRINTS | Phytochrome signature | 546 | 562 | IPR001294 | GO:0006355|GO:0009584 | |
| Vvi12g703 | 915 | ProSiteProfiles | Histidine kinase domain profile. | 694 | 915 | IPR005467 | - | |
| Vvi12g703 | 915 | CDD | PAS | 554 | 665 | IPR000014 | - | |
| Vvi12g703 | 915 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 557 | 662 | IPR035965 | - | |
| Vvi12g703 | 915 | Gene3D | - | 667 | 749 | - | - | |
| Vvi12g703 | 915 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 136 | IPR035965 | - | |
| Vvi12g703 | 915 | SUPERFAMILY | GAF domain-like | 298 | 422 | - | - | |
| Vvi12g703 | 915 | SMART | gaf_1 | 167 | 300 | IPR003018 | GO:0005515 | |
| Vvi12g703 | 915 | Gene3D | PAS domain | 75 | 115 | - | - | |
| Vvi12g703 | 915 | Gene3D | - | 212 | 298 | IPR029016 | - | |
| Vvi12g703 | 915 | Gene3D | - | 146 | 211 | IPR029016 | - | |
| Vvi12g703 | 915 | PANTHER | PHYTOCHROME C | 1 | 114 | - | - | |
| Vvi12g703 | 915 | PANTHER | PHYTOCHROME C | 115 | 205 | - | - | |
| Vvi12g703 | 915 | Pfam | GAF domain | 168 | 289 | IPR003018 | GO:0005515 | |
| Vvi12g703 | 915 | Pfam | PAS fold | 543 | 665 | IPR013767 | GO:0006355 | |
| Vvi12g703 | 915 | Pfam | PAS fold | 421 | 527 | IPR013767 | GO:0006355 | |
| Vvi12g703 | 915 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 421 | 529 | IPR035965 | - | |
| Vvi12g703 | 915 | CDD | PAS | 421 | 527 | IPR000014 | - | |
| Vvi12g703 | 915 | Pfam | Phytochrome region | 303 | 425 | IPR013515 | GO:0006355|GO:0009584 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi12g703 | - | - | vvi:100258014 | 977.237 |