Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g705 ATGGCGGATTCAGACAACGACTCGGGTGGGCACAACAACAGCAACGCCAACAGCGAGCTGTCGGCGAGAGAGCAAGACCGATTCCTGCCGATCGCAAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCAAACGCGAAGATCTCCAAAGATGCTAAAGAGACGGTGCAGGACTCCGGCAGCAGTGGGGGTTTCAATGGGGGTGGGATGTACGGTGGGATGATGATGATGGGGCATCATCAGGGACAGGCTTACGGCTCGGGTTCAGCGCCTCTACCACTCAATTCTCTGCTTCACAGTTCACACCACCATCTTCCTATCTTCATCCTTACCGGCAAAATGCAGCACGCGCCGGTCTTCACGCGTCTGCTTACTCTCTCGGTGTGCTTGCTCTTCCTATCCTGCGCCACCCATGCGCACAATATCACTCACATCCTCGCCAAGTACCCGGAGTTCTCGACCTTTAGCCACTACTTAACCGTCACCCACCTCGCCGGCGAGATTAACCGCCGACAGACTATCACTGTTCTAGCCGTTAGTAATGCTGGAATGGCGGATCTTCTCTCCAAGCACCTCTCCGTTTACGTCATCAAGAACGTGCTCTCCCTCCACGTTCTAGTTGACTATTTCGGCGCCAGGAAGCTCCACCAGATCACCGACGGCACCGCCTCGTCTGCGACTTTGTTCCAGTCCACTGGATCCGCTCCCGGAACCGCCGGTTTCGTTAACATTACCGATCTCAAGCACGGAAAAGTCGGATTCGGAGCTCAAGACAGCGGCCATCTCAACGCCTACTTCGTTAAGTCGGTGGTGGAGATTCCGTACAACATCTCCGTGCTAGAGATCAGCCAGATCTTGACTTCAGCTCAAGGCTGCAAAGCGTTCGGCGACTTGTTAGAAGCTTCTGGAGCCATAAAAACGTTCGAGGAGAACGCCGACGGCGGGCTAACGGTGTTTTGCCCTTCGGACGATGTTATCAAGGGCTTTATGCCGAAGTACAAGAATTTGACGGCGGCAGGGAAGGTGTCGCTGCTGCTGTACCACGGCATTCCGATTTATCAGTCGATGCAGATGTTGAAATCGAGCAATGGAGTGACGAACACTTTGGCAACCGACGGAGCTAAGAAGTACGACTTCACGGTGCAGACTGAGGGAGAGGACATCACGTTGGAGACGAAGGTGGTGACGGCAAGGGTGACGGGGACGGTGTTGGATCAGGAGCCTGTGGTGCTCTACAAGATTAACAAGGTTTTGTTGCCTAGGGAGTTGTTCGAGGGGACTGTCGAAGACGATGAAGCGGAATCGCCGAAAGCGGCGTCGCCCAAGTCCGATGATTCTGAAGACTCGACTGCTGACCAGGATGATGAGAATAGCGGCGGTAGATTTGACGGTGGGAGATGGGCCTCAGTGTTGTTGACTGTGTTCGCGGGAGCTTTCGTTTTGTTTTGA 1449 54.52 MADSDNDSGGHNNSNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQDSGSSGGFNGGGMYGGMMMMGHHQGQAYGSGSAPLPLNSLLHSSHHHLPIFILTGKMQHAPVFTRLLTLSVCLLFLSCATHAHNITHILAKYPEFSTFSHYLTVTHLAGEINRRQTITVLAVSNAGMADLLSKHLSVYVIKNVLSLHVLVDYFGARKLHQITDGTASSATLFQSTGSAPGTAGFVNITDLKHGKVGFGAQDSGHLNAYFVKSVVEIPYNISVLEISQILTSAQGCKAFGDLLEASGAIKTFEENADGGLTVFCPSDDVIKGFMPKYKNLTAAGKVSLLLYHGIPIYQSMQMLKSSNGVTNTLATDGAKKYDFTVQTEGEDITLETKVVTARVTGTVLDQEPVVLYKINKVLLPRELFEGTVEDDEAESPKAASPKSDDSEDSTADQDDENSGGRFDGGRWASVLLTVFAGAFVLF* 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9707558 9714683 + Vvi12g705 Vvi12g705 773228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g705 482 Gene3D Histone, subunit A 16 62 IPR009072 GO:0046982
Vvi12g705 482 SUPERFAMILY FAS1 domain 285 420 IPR036378 -
Vvi12g705 482 Gene3D FAS1 domain 137 260 IPR036378 -
Vvi12g705 482 Gene3D FAS1 domain 280 421 IPR036378 -
Vvi12g705 482 MobiDBLite consensus disorder prediction 1 24 - -
Vvi12g705 482 SMART fasc_3 317 421 IPR000782 -
Vvi12g705 482 Pfam Fasciclin domain 292 420 IPR000782 -
Vvi12g705 482 Pfam Fasciclin domain 150 218 IPR000782 -
Vvi12g705 482 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 286 455 IPR033254 -
Vvi12g705 482 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 118 289 IPR033254 -
Vvi12g705 482 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 58 IPR003958 -
Vvi12g705 482 ProSiteProfiles FAS1/BIgH3 domain profile. 279 418 IPR000782 -
Vvi12g705 482 MobiDBLite consensus disorder prediction 1 22 - -
Vvi12g705 482 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 118 289 - -
Vvi12g705 482 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 286 455 - -
Vvi12g705 482 SUPERFAMILY Histone-fold 13 58 IPR009072 GO:0046982
Vvi12g705 482 ProSiteProfiles FAS1/BIgH3 domain profile. 139 286 IPR000782 -
Vvi12g705 482 MobiDBLite consensus disorder prediction 428 464 - -
Vvi12g705 482 MobiDBLite consensus disorder prediction 428 447 - -
Vvi12g705 482 SUPERFAMILY FAS1 domain 145 287 IPR036378 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g705 Vvi19g659 ECH
Vvi12g705 Vvi19g668 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g705 - - vvi:100242544 696.427