Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g737 ATGGGTTACATTTGTGATTTCTGTGGAGAACAGAGATCCATAGTGTATTGTAGGTCTGATGCTGCTAGCTTGTGTCTGTCATGTGATCGGCATGTCCATTCTGCTAATGCGCTTTCCAGGCGCCATTCCAGGACCCTTTTATGTGAAAGATGTAATTCTCAACCTGCATTTGTTAGATGTATCGAAGAGAAGATCTCTCTTTGTCAAAATTGTGATTGGACTGGCCATGGTGGATCTACTACCACTTCATCACATAAGAAGGAAACTATCAATTGTTACTCAGGCTGCCCTTCATCCGAAGGGCTTTCTACAATGTGGCCATTTGTTTTAGATTTGCCTTCTACAGGCAATTCCACTTGTGAGCAGGGTTTGAGTTTAATGTGCCTCAACGAGACCAGTGAGATGAACTCTTGGGGCCCTCCAGGAAATAGCAGTAGGCAAGACGCATCTCTCACAGTTGAAGTGAATGATGCTAATAATGTGGATAAGTCGAGCATATTGATTGGTTCCTCTTCAGTTCCTGAACTCAACTCTCCATCCCAAAAGTTAGACCAGCCATCTGGATCTGCTGATTTAACTTTGCCTAAGTTACTCTGTCCTGGAACAGATGATCTTGGGTTCTGTGAAGATGATAGTCTGTATGAGGACTTCAATATGGATGAAGTTGATTTGAATCTTGAGAACTATGAAGAACTCTTTGGTGTAGCTCTTAGCCACTCTGAACAGCTTTTTGAGAATGGTGGAATTGATAGCTTGTTTGGGAAAATGGACACATCCGGTGCTGATTCCCACTGTCAGGGTGCAGTTATAGCTGAGGGGTCGGTCGGACTAGCAAATGCAGTGCAGCCAACTTACAGCAATGCAGCATCTGCTGATTCCATAATGAGCTCTAAAACTGAACCAATCCTTTGTTTCACGGGAAAGCAAGCCCATTCCAGCCTGTCATTTTCTGGCCTCACTGGCGAGAGTAGTGCAGGAGACTATCAAGATTGTGGGGCTTCTCCAACATTTCTCATGGGGGAACCTCCATGGTGTCCCCCAGGACCTGAAAGCTCCTTGCCATCAACTAGCAGGAGTAGTGCTGTTATGCGTTACCGGGAAAAGAAGAAGAATCGCAAATTTGATAAAAGAGTGAGGTATGCTTCACGGAAGGCAAGGGCTGATGTTAGACAGCGTGTGAAGGGGCGCTTTGTCAAGGCTGGTGAAGCTTATGACTATGACCCAATAAGCGAAACCCGGAGCTTCTGA 1248 45.35 MGYICDFCGEQRSIVYCRSDAASLCLSCDRHVHSANALSRRHSRTLLCERCNSQPAFVRCIEEKISLCQNCDWTGHGGSTTTSSHKKETINCYSGCPSSEGLSTMWPFVLDLPSTGNSTCEQGLSLMCLNETSEMNSWGPPGNSSRQDASLTVEVNDANNVDKSSILIGSSSVPELNSPSQKLDQPSGSADLTLPKLLCPGTDDLGFCEDDSLYEDFNMDEVDLNLENYEELFGVALSHSEQLFENGGIDSLFGKMDTSGADSHCQGAVIAEGSVGLANAVQPTYSNAASADSIMSSKTEPILCFTGKQAHSSLSFSGLTGESSAGDYQDCGASPTFLMGEPPWCPPGPESSLPSTSRSSAVMRYREKKKNRKFDKRVRYASRKARADVRQRVKGRFVKAGEAYDYDPISETRSF* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10077598 10084191 - Vvi12g737 Vvi12g737 773260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g737 415 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi12g737 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 415 - -
Vvi12g737 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 415 - -
Vvi12g737 415 MobiDBLite consensus disorder prediction 346 379 - -
Vvi12g737 415 MobiDBLite consensus disorder prediction 170 188 - -
Vvi12g737 415 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi12g737 415 CDD Bbox1_BBX-like 4 47 - -
Vvi12g737 415 MobiDBLite consensus disorder prediction 365 379 - -
Vvi12g737 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Vvi12g737 415 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Vvi12g737 415 MobiDBLite consensus disorder prediction 170 189 - -
Vvi12g737 415 CDD Bbox1_BBX-like 47 87 - -
Vvi12g737 415 Pfam CCT motif 358 400 IPR010402 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13832 PF06203 CCT 8.80E-17 CL0281 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g737 - - vvi:100254423 833.558