Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g752 ATGAGTAATAGCATCTTCAATAGCATAAAGGTTGTGGTCTTCTCCACCAAAATCAACCTACTTGTGCCCTTTGGCCCCGCGGCAATTTTGGTGGATAAGTTTACTAACAATCACGGTTGGGTCTTCTTTCTTAGTTTACTGGGCATAATACCTCTGGCTGAGCGATTGGGTTATGCTACAGAGCAGTTAGCTTTGTTCACTGGTCCTACAGTTGGGGGTTTGTTAAATGCCACCTTTGGAAATGCCACAGAGTTGATAATATCAGTTTATGCACTGAAGAATGGCATGATACGTGTTGTTCAACAGTCATTATTGGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGATGTGCATTTTTCAGTGGAGGAATGGTTTTTTCTAAGAAGGAACAGGTGTTTAGCAAGGCAGCTGCTGGAGTGAACTCAGGGTTGCTGTTGATGGCAGTCATGGGGCTTCTGTTTCCAGCTGTCCTCCACTTCACTCACACTGAATTGCATTTTGGGAGTTCTGAGTTGGCCCTTTCAAGATTTAGTAGCTGCATTATGCTTGTGGCATATGCTGCCTATCTTGTTTTTCAGCTGAAGAGTCAGAAAAACCTTTATGTTCCAGTCGATGAGGGCGGGGACCAAACTGAAGGGGATGAAGATGAAGCTCCTGAAATTTCCAAGTGGGAATCCATAATATGGCTAACTATTTTGACTTTGTGGATTTCAGTCCTCTCAGAGTACCTAGTTAATGCCATAGAGGGGGCATCTGTTGCATGGAAAATGCCAATTGCATTTATTAGTGTTATCCTGCTCCCAATTGTTGGGAATGCAGCAGAGCATGCAAGTGCAATTATATTTGCCATGAAAGACAAACTTGACATTTCCTTGGGAGTGGCAATAGGCTCATCAACACAAATATCGATGTTTGGGATTCCCTTCTGTGTGGTTGTTGGGTGGATCATGGGACGTCCTATGGACTTGAATTTTCAGCTTTTCGAGACAGCCACCCTTTTCATGACTGTCATAGTTGTGGCCTTCATGTTGCAGGAGGGAACTTCCAACTATTTTAAAGGAATAATGCTCATCTTTTGCTATCTGATAGTTGCTGCAAGTTTCTTTGTACATATTGATCCAACTTCTATAGGTGAGTTACTGTTCACCAGCGATAAAAAGAAGAAAGAAAAAATGACTGGGAGAGGTGCAAGAGAGAGGTTTCGAAGGGATTACCCTCCGAGATTTGAAGAGAAGAGCCACTCTGGGCGGAGCAGTCACCCCCCATCGAGACACTTATGGGTTGGAAACCTATCGCACAGCATTTCTGAGAACACTCTCACTGATCCTTTTCTACAGTTCGGAGAGCTCGACACTGTCGCTTTTCAGCCGGGTCGTAGCTATGCTTTCATTAATTTCAAGCAGGAAGAAGATGCCATTCATGCCATGAGATCACTTCAAGGTTTTTCTGTGGCTGGCATGCCTCTTAAAATTGAGTTTGCAAAGGCGGAGAAGTCATCAACAGCATCACGTGATGAAGACTACCTGCAACGACGGGATGAACAACGGTCCACAATAAGAGGATCTCCATTCTCTCAAAGGGACTCAAGAACACGTCATGGTAGTCCTGACACATTTTATCCTGACAAGTCTAGTATCAGTGATAGAAAGGGAGAGCCTTGTGAGGTTTTATGGATAGGATTTCCCTCCTTACTGAAGGTGGATGAAACGATTTTAAGGAAGGCCTTTTCACCATTTGGTGAGATTGAGAAGATTACTTCATTCCCAGGTCGTAGTTATGCCTTTGTCCAATTCAGGAGTGTGACGGCAGCTTGCAGGGCAAAAGAAACTCTTCAGGGGAAGTTATTTGGCAATCCCCGTGTGCATATTTGTTTTGCAAAGAGTGAACCTGGTCCATCAAACGGTGGAAGGAATACAATGAATGCCCCTCCATCCCCACATTTTCAGTCCAATAGTCGCCCTGGATCTTCTGAAAATTTCCGGCAAGAGAGGAATTTTGGGAACTTCCCTGGAGATCCCAGTGTCAGATCTCCTCGTTTCATCTCAAATTTGGAGACCGAAGATTCTGATGTCATTGATTTTGGTAGGAAGAGTACTTTATGGACAGATGGAAATGGTACATTTGAACATAGGAGGTTCCGAGACATGGGATCTGAACTAGGAGCATCAGCAGACGTATATGAGCATCACAGTAGTCCTACAAGAGACAGGGTTGCTCACTTTCGTGATTTTTCTCCCCAGAAATTTCCTCGGAGAAGTCCCTTCTATGAAGATCCATGGGACTTGCCAGAAGATGCCTACCTATTTCATGGAGCAAAGAAACTAAAAACTGGCTCCTTCCCTCCTGAGAAAGAGCTTCCAGAGTATCCTTTCTCTGTTGCAGAACAAGAGAAGCATTTACTGCCAAGAATATTTTCTGACTATCCCCAACCTGAGGCCATTGATAAAAACTATGAGCCTGGATCGTTTGGGTATAAACAGATGTCTGATCACCCAATGAATCTGACCCGTCCTCATGGGGAAATGAGTGAACAGTGGAAAGCATCCTATGATGGTTTTCAGGTAGGTTCTGGTTCTTTGTCTTCAAACCCTGTTGATTGGAAAAGATTAACTCCTGAATCACATCCATCTTCTTTGAGTGGGGAGTGGAAATGGGAAGGGACCATAGCAAAGGGAGGATCTTCCATCTGTCGTGCTCGCTGCTTTCCTGTGGGAAAGGTCATGGACATCATGTTGCCTGAATTTTTAGATTGCACTGCAAGGACTGGTCTGGACATGCTTGCAAAGCATTACTATCAAGCAGCTAGTGCTTGGGTGGTATTCTTTGTCCCTGAAAGCGATGCTGATATTGGATACTATAATGAGTTCATGAATTATCTAGGGGAGAAGCAGCGAGCTGCTGTGGCTAAATTGGATGAAAGAACCACGTTGTTTCTCGTACCCCCATCAGAATTCTCAGAGAAGGTTCTGAAAGTGCCAGGGAAATTGAGCATTTCTGGTGTTGTTTTAAGGTTAGAGAATCCTGGTTCTAATTTTGGTTCTCTTGATCAGCCGCAGGCACCGAGTTTCATGTCTTTTCATGGGGATACACAATACCCAAAGCCAACATCACCATCGGGCCTGCTCTGCCCATGCTGTTGGTGGTGCATCCAATTCCATTAA 3165 44.36 MSNSIFNSIKVVVFSTKINLLVPFGPAAILVDKFTNNHGWVFFLSLLGIIPLAERLGYATEQLALFTGPTVGGLLNATFGNATELIISVYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFSGGMVFSKKEQVFSKAAAGVNSGLLLMAVMGLLFPAVLHFTHTELHFGSSELALSRFSSCIMLVAYAAYLVFQLKSQKNLYVPVDEGGDQTEGDEDEAPEISKWESIIWLTILTLWISVLSEYLVNAIEGASVAWKMPIAFISVILLPIVGNAAEHASAIIFAMKDKLDISLGVAIGSSTQISMFGIPFCVVVGWIMGRPMDLNFQLFETATLFMTVIVVAFMLQEGTSNYFKGIMLIFCYLIVAASFFVHIDPTSIGELLFTSDKKKKEKMTGRGARERFRRDYPPRFEEKSHSGRSSHPPSRHLWVGNLSHSISENTLTDPFLQFGELDTVAFQPGRSYAFINFKQEEDAIHAMRSLQGFSVAGMPLKIEFAKAEKSSTASRDEDYLQRRDEQRSTIRGSPFSQRDSRTRHGSPDTFYPDKSSISDRKGEPCEVLWIGFPSLLKVDETILRKAFSPFGEIEKITSFPGRSYAFVQFRSVTAACRAKETLQGKLFGNPRVHICFAKSEPGPSNGGRNTMNAPPSPHFQSNSRPGSSENFRQERNFGNFPGDPSVRSPRFISNLETEDSDVIDFGRKSTLWTDGNGTFEHRRFRDMGSELGASADVYEHHSSPTRDRVAHFRDFSPQKFPRRSPFYEDPWDLPEDAYLFHGAKKLKTGSFPPEKELPEYPFSVAEQEKHLLPRIFSDYPQPEAIDKNYEPGSFGYKQMSDHPMNLTRPHGEMSEQWKASYDGFQVGSGSLSSNPVDWKRLTPESHPSSLSGEWKWEGTIAKGGSSICRARCFPVGKVMDIMLPEFLDCTARTGLDMLAKHYYQAASAWVVFFVPESDADIGYYNEFMNYLGEKQRAAVAKLDERTTLFLVPPSEFSEKVLKVPGKLSISGVVLRLENPGSNFGSLDQPQAPSFMSFHGDTQYPKPTSPSGLLCPCCWWCIQFH* 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10215099 10237447 + Vvi12g752 Vvi12g752 773275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g752 1054 MobiDBLite consensus disorder prediction 633 665 - -
Vvi12g752 1054 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 1 378 IPR004713 GO:0006812|GO:0008324|GO:0016021
Vvi12g752 1054 MobiDBLite consensus disorder prediction 404 419 - -
Vvi12g752 1054 Pfam Sodium/calcium exchanger protein 40 195 IPR004837 GO:0016021|GO:0055085
Vvi12g752 1054 Pfam Sodium/calcium exchanger protein 228 367 IPR004837 GO:0016021|GO:0055085
Vvi12g752 1054 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 556 629 IPR000504 GO:0003723
Vvi12g752 1054 Gene3D - 543 634 IPR012677 -
Vvi12g752 1054 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 1 378 - -
Vvi12g752 1054 SUPERFAMILY RNA-binding domain, RBD 546 631 IPR035979 GO:0003676
Vvi12g752 1054 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 425 497 IPR000504 GO:0003723
Vvi12g752 1054 TIGRFAM caca2: calcium/proton exchanger 5 370 - -
Vvi12g752 1054 SMART rrm1_1 426 493 IPR000504 GO:0003723
Vvi12g752 1054 SMART rrm1_1 557 625 IPR000504 GO:0003723
Vvi12g752 1054 MobiDBLite consensus disorder prediction 404 424 - -
Vvi12g752 1054 MobiDBLite consensus disorder prediction 503 550 - -
Vvi12g752 1054 MobiDBLite consensus disorder prediction 628 680 - -
Vvi12g752 1054 Gene3D - 410 520 IPR012677 -
Vvi12g752 1054 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 568 621 IPR000504 GO:0003723
Vvi12g752 1054 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 427 490 IPR000504 GO:0003723
Vvi12g752 1054 Gene3D - 215 371 IPR044880 -
Vvi12g752 1054 Gene3D - 69 206 IPR044880 -
Vvi12g752 1054 MobiDBLite consensus disorder prediction 527 550 - -
Vvi12g752 1054 Pfam SPOC domain 883 994 IPR012921 -
Vvi12g752 1054 SUPERFAMILY RNA-binding domain, RBD 413 504 IPR035979 GO:0003676
Vvi12g752 1054 MobiDBLite consensus disorder prediction 503 519 - -
Vvi12g752 1054 CDD RRM3_Spen 558 628 - -
Vvi12g752 1054 TIGRFAM cax: calcium/proton exchanger 21 370 IPR004798 GO:0006816|GO:0015369
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi12g752 Vvi19g743 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g752 - - vvi:100249524 1343.56