Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g781 ATGCATTCTCCATATGAAGCACACATGAATGTTGTCTATAAAATACTGCAATATCTCAAAGGAACCCCAAGAAAAGGACTTCACTTTGGAAAGCATGACCAATTCAAAATAGAGGCCTTTACGGATGCAGATTGGGCAGGGTCTATAGAAGATAGGAGGTCAACATCTGGCTACTGTACATTTGTGTTTGGAAATCTCATCACATGGAGAAGTAAAAAGCAAAATGTGGTAGCTAGAAGTAGTGCTGAAGTTAAGTTTAGATCAATAGCTCATGGAATTTGTGAAGTCTTGTGGATCAAGAGAGTATTAGAAGAACTAAAGATTACAATTCATCCTTTAGCTATGATAAGCAATAGTCTACTACCATTATTGGAAATTATTGTGTTGATAAGATCCCAAGAAGAAATAATCAATGATCTGATAAAACATGTCTGGGCTAGGACTAGAATTTTTTTTATTTCTAATAAAGCTAAAGAGGCTTTGGAGGATTATTATGGTGCACTAGCAAGAGGGAACATAGCAAAAATGAATAAAAAAAGCCCAAATAGTACAAGTAAAGCACCTCTTGTTCAAGGACATTTAAGAAATTGTGTTTGGGAATCATTCAAGAAAAGGAAGAAACTAGGGAAAATTGCAGAAGAGTTGGTGGAAGAAACAAGTGAAGAAACAAGAAAGCAAATTGAAACATTCTTGCTTCATATTTACTTTGCCTTTAATTTTCTTATGACATTTATGCAATTATTTATTGAAAATATTTCTTATTTTTGTTCAGCAAATATGTCAAACCCAATTTTCTCACTTCTCGCCTCTCAAGTTTTAACTGGTGAAAACTTTGTAAAATGGAAAAGCAACATGAACATTCTTCTCATTAATGAGAACTACCACTTTGTCCTTAAGGAGGTTTGTCCTCCAGTGCCTCCAGCTAATGCCTCCAAGGCTGTCTCAGAAGAGTATAACCTAGTGGTTGCAGATTTTGGGCTGGCTAAACTCGTGGACTACAGGGATACTCATGTTACCACGGCTGTACATGGAACACTTGGGCATATTGCCCCAGAGTACCTCTTCACTGGAAGGTCTTTGGAGAAGACTGATGTTTACGGATATGGGATCATGCTTCTTGAGCTCATCACTGGGCAGAGGGCTTTTGATCTTGCCCGTTTGGCCAGCAATGAGAATGTTATGCTGCTGTCCCTAGTCAAGGAACTGTTGAACAACAAGAAATTGGAAACACTGGTTGATTCTAAGCTGCAGGGCTATTACATTGTAGAGGAGGTAGAGGAGCTAATCCAGGTGGCTCTCCTTTGCACACTAAGCACAGCTTCAGACCGACCCAAGATGTCAGATGTGGTTAAAATGCTTGAAGGTGATGGTTTGGCTGAAAGGTGGGAACAGTGGCAAAAGGAGGATATAATTTGCGGAGAGCAAAATCATAGCAACTTCCCCTCTAATAATTGGATTATAAATGACTCCACTCCAGGCCTTCATCCTGAAGAATTGTTCGGTCCCAGATGA 1512 39.02 MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCTFVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKITIHPLAMISNSLLPLLEIIVLIRSQEEIINDLIKHVWARTRIFFISNKAKEALEDYYGALARGNIAKMNKKSPNSTSKAPLVQGHLRNCVWESFKKRKKLGKIAEELVEETSEETRKQIETFLLHIYFAFNFLMTFMQLFIENISYFCSANMSNPIFSLLASQVLTGENFVKWKSNMNILLINENYHFVLKEVCPPVPPANASKAVSEEYNLVVADFGLAKLVDYRDTHVTTAVHGTLGHIAPEYLFTGRSLEKTDVYGYGIMLLELITGQRAFDLARLASNENVMLLSLVKELLNNKKLETLVDSKLQGYYIVEEVEELIQVALLCTLSTASDRPKMSDVVKMLEGDGLAERWEQWQKEDIICGEQNHSNFPSNNWIINDSTPGLHPEELFGPR* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 12367769 12383059 + Vvi12g781 Vvi12g781 773304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g781 503 CDD RNase_HI_RT_Ty1 38 116 - -
Vvi12g781 503 Pfam Protein kinase domain 316 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g781 503 Gene3D Transferase(Phosphotransferase) domain 1 285 473 - -
Vvi12g781 503 ProSiteProfiles Protein kinase domain profile. 159 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g781 503 PANTHER LRR RECEPTOR KINASE SERK2 274 503 - -
Vvi12g781 503 SMART serkin_6 202 453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g781 503 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 274 503 - -
Vvi12g781 503 SUPERFAMILY Protein kinase-like (PK-like) 315 458 IPR011009 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76131 PF00069 Pkinase 2.40E-11 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g781 K13416 - vvi:100243623 336.65