Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g800 ATGAGAGAAGGAAGGCCAATGGAAATTGATCTGTCCCTGAAGATAGATGATGAAGGAGAAGGAGATGGAGAAGGAGAGGAAGAAGCAGAAGGAGAAGAAGGAGATGAACAAGTGCAACGAGAAGATCAACAAAAGGAAAAGGAAACAGGTCATGTAGAAGATAAAGGAGAAGATGTGGAAGCTGCTTCATCTGTTGAAGAGAACTTGAAGACGGAAGAGTTATGTGTGTTACAGATGGAGATGAATCGAATGAAAGAGGAGAACAAAGTGTTGAGGAAGGTAGTAGAGGAAACAATGAAAGATTACCGTGATCTCCAAATGAAATTCGCTCTTATTCAACAGAATAAGCAAAACAAGGATCTCCAAATCTCCCTCTCCCTCCATGGCAAGGACAGAAATCTTCAAGATCCCAGGAGGATTTCCAAAGTCTTGAATATCAATGACCAAATCCTTCCATCATCACCCGAGGACAACGAAGAGAGCGAATTAGGGCTGTCTTTGAGGTTGAAACCCAATACAAGAGAAGAAAGAGAGGAAGATGGAGAAGCAAATAAGGAAGAAACTGTAAGCTTTACACCCATACCAAATAGGCTACCTAGGACTGACTTGGCTGCAATCAAAAGCCACGCTGCTTCCCCACCCAACAGAAAAGCTAGGGTTTCAGTCAGAGCAAGATGCCAAACAGCCACAATGAACGATGGCTGCCAATGGAGAAAATATGGGCAGAAAATCGCGAAAGGAAACCCTTGCCCACGAGCCTACTATCGTTGCACCGTTGCCCCAGGATGCCCAGTTAGAAAACAGGTTCAAAGATGCTTAGAGGACATGTCAATACTCATAACCACCTATGAAGGAACACATAACCATCCACTCCCTGTGGGTGCAACAGCGATGGCTTCAACAACTTCTGCAGCAGCCTCCTTCATGTTAGTAGATTCAAGCAATCCTCTTTCAGAAGCCTCCCTTTCTTACCCTAATTCCCATTTCATAAACCCGGGTTCTTCATCATCGATGATCAGAAGCATAAACCCTAATGACCCTTCTAAAGGGATTGTCCTTGACCTCACCAACACTACCCCTTCTGATCCACAACAATTCCCACTGCAAAGCTCCTCACACTCATCCGCCCAATTAGGTTTCAGTTGGATGCCTAGCAAACCAAGCTACCATAGTGGTGGTAGTACCAATATTGCCAACAATCTTTTTCCTAACCCTAGAGCAGCTGAAGAAGACAGGTCCATAGCTGAAAATGTGACTGCAATCACTTCCAATCCCGACTTTAGGGTTGCGGTTGCGGCTGCAATCACTTCCTTCATCAACAAAGAAAGCCATACGAGTACTCACACCACAGGGCCTCCATTTGCTAACCCAAGGGATGGCGAGGGTGGTGGTGGGTCTAGTGGCAACAACTGGGTTCTTGAATCTCTCCCTGCTAACCCATCAATTTTTTTTTTCCATTTTTCAAATGGTTAG 1473 44.94 MREGRPMEIDLSLKIDDEGEGDGEGEEEAEGEEGDEQVQREDQQKEKETGHVEDKGEDVEAASSVEENLKTEELCVLQMEMNRMKEENKVLRKVVEETMKDYRDLQMKFALIQQNKQNKDLQISLSLHGKDRNLQDPRRISKVLNINDQILPSSPEDNEESELGLSLRLKPNTREEREEDGEANKEETVSFTPIPNRLPRTDLAAIKSHAASPPNRKARVSVRARCQTATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPVGATAMASTTSAAASFMLVDSSNPLSEASLSYPNSHFINPGSSSSMIRSINPNDPSKGIVLDLTNTTPSDPQQFPLQSSSHSSAQLGFSWMPSKPSYHSGGSTNIANNLFPNPRAAEEDRSIAENVTAITSNPDFRVAVAAAITSFINKESHTSTHTTGPPFANPRDGEGGGGSSGNNWVLESLPANPSIFFFHFSNG* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13065134 13099628 + Vvi12g800 Vvi12g800 773323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g800 490 Coils Coil 81 101 - -
Vvi12g800 490 MobiDBLite consensus disorder prediction 19 37 - -
Vvi12g800 490 MobiDBLite consensus disorder prediction 1 67 - -
Vvi12g800 490 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 8 477 IPR044810 GO:0003700
Vvi12g800 490 Pfam WRKY DNA -binding domain 232 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g800 490 MobiDBLite consensus disorder prediction 442 471 - -
Vvi12g800 490 Gene3D WRKY domain 216 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi12g800 490 MobiDBLite consensus disorder prediction 1 18 - -
Vvi12g800 490 ProSiteProfiles WRKY domain profile. 226 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g800 490 MobiDBLite consensus disorder prediction 161 186 - -
Vvi12g800 490 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 8 477 - -
Vvi12g800 490 SMART WRKY_cls 231 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi12g800 490 MobiDBLite consensus disorder prediction 150 196 - -
Vvi12g800 490 MobiDBLite consensus disorder prediction 38 67 - -
Vvi12g800 490 SUPERFAMILY WRKY DNA-binding domain 224 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13835 PF03106 WRKY 2.00E-24 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g800 - - vvi:100264153 912.909