Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g808 ATGTCGTTCCGCAGCATAGTTCGTGATGTGAGGGATGGGTTTGGCAGCTTATCTCGGAGGAGTTTTGATGTCAGGTTGCTGGGGCATAGTAGGGGTAAATCTATTGGTTCATTTCACGAGATGCATGATCAGCCTCTGGTAATTCAAAATAGCCGTTGGGCTAACCTGCCTCCAGAGCTGCTTTATGATATTATTAAGAGGCTGGAGGAGAGTGAGAGTACATGGCCGTCTCGAAAACATGTTGTTGCATGCGCTGCTGTTTGCCGGTCATGGAGGACTATGTGTAAAGAAATTGTTAGAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAGCCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCTAACTTAACTTACCACCTTTTTCTATGTCTTAGCCCTGCTTTGCTAGTTGAAAATGGGAAGTTCCTTCTTTCTGCAAAAAGGAATCGCCGGACAACTTGCACAGAGTATGTTATCTCCATGGATGCTGAGAACATTTCAAGGTCAAGCAGCACTTACATTGGAAAACTGAGGTCGAATTTCCTTGGAACAAAATTCATAATATATGACACACAGCCTCCACATACCTGTGCACATATTCCTCCTCCAGGGAGAACAAGCAAAAGATTTTATTCCAAGAAGGTCTCGCCAAAAGTTCCAACTGGCAGCTACAACATTGCCCATATCACTTATGAACTGAATGTGCTGGGCACCCGTCAGCCAGAGCTCCTTCCCCGTGCTCTTGAAGACTCGCCCTTGGTTCTTAAAAACAAGGCTCCAAGATGGCACGAGCAATTACAATGCTGGTGCCTGAACTTCCGGGGGCGAGTAACGGTTGCATCAGTGAAGAACTTTCAGTTGATTGCAGCCACACAGCCAGCCGCTGCATGTGAATAG 933 46.3 MSFRSIVRDVRDGFGSLSRRSFDVRLLGHSRGKSIGSFHEMHDQPLVIQNSRWANLPPELLYDIIKRLEESESTWPSRKHVVACAAVCRSWRTMCKEIVRSPEFCAKLTFPVSLKQPGPRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRNRRTTCTEYVISMDAENISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTCAHIPPPGRTSKRFYSKKVSPKVPTGSYNIAHITYELNVLGTRQPELLPRALEDSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAACE* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13356300 13361148 - Vvi12g808 Vvi12g808 773331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g808 310 Gene3D Tubby Protein; Chain A 112 257 IPR025659 -
Vvi12g808 310 Gene3D Tubby Protein; Chain A 258 309 IPR025659 -
Vvi12g808 310 Gene3D - 48 101 - -
Vvi12g808 310 PANTHER TUBBY-LIKE F-BOX PROTEIN 263 306 - -
Vvi12g808 310 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 254 - -
Vvi12g808 310 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vvi12g808 310 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vvi12g808 310 PRINTS Tubby superfamily signature 267 284 IPR000007 -
Vvi12g808 310 PRINTS Tubby superfamily signature 285 301 IPR000007 -
Vvi12g808 310 ProSitePatterns Tub family signature 1. 285 298 IPR018066 -
Vvi12g808 310 PANTHER TUBBY-RELATED 1 254 - -
Vvi12g808 310 PANTHER TUBBY-RELATED 263 306 - -
Vvi12g808 310 SUPERFAMILY F-box domain 49 108 IPR036047 GO:0005515
Vvi12g808 310 SUPERFAMILY Tubby C-terminal domain-like 102 305 IPR025659 -
Vvi12g808 310 Pfam Tub family 262 302 IPR000007 -
Vvi12g808 310 Pfam Tub family 114 254 IPR000007 -
Vvi12g808 310 Pfam F-box domain 53 100 IPR001810 GO:0005515
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13837 PF01167 Tub 1.80E-51 CL0395 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g808 K19600 - vvi:100247010 599.742