Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g817 ATGAAGTTGGTACCCGGAGCTCAATCAGTCAGATGCATCTTTGTTGCCTTGTGTAGTGTCTATGTGATTGGGCTTTTTCATATAGCTGTTGCTCAAACCACTGAAGCCAATGCTACCACTGATCCATCTGAAGTGAGAGTTTTGAATTCTATATTTCAACAATGGGGAATCTCAGCATCAAACCAATGGAACACAAGTGGGGAACCATGCACCGGAGCTGCCATTGACTCAACCAGCATTGATAGCTCTGACTATAATCCCGGAATCAAATGTGATTGTTCCTACGACAATGCCTCTACTTGCCATATCACTCAACTGAAAGTTTATGCATTGGACGTCGTTGGTGTAATCCCAGATGAGCTATGGAATTTGACTTTCCTCACCAATCTGAATTTGGGTCAAAATTATTTGACAGGTCCCCTATCTGCATCCATTGGCAATCTAACAAGCATGCAGTACTTGAGCATGGGAATTAATGCACTATCAGGGGAGCTTCCTAAGGAACTTGGACAGCTGACTGATTTACGTTCATTAGCTTTTGGGACAAACAACTTCTCTGGTTCTCTGCCGTCTGAGATTGGGAATTTGGTGAAGTTAGAGCAACTTTACTTTGATAGCTCTGGGGTAAGTGGTGAGATTCCTTCAACATTTGCTAATCTACAGAGCTTGACTACAGTGTGGGCGTCAGATAATGAACTCACAGGAAACATACCCGATTTCATTGGGAATTGGTCAAAGCTCACTGTCTTGAGGCTTCAGGGGAACTCTTTTGAAGGTGCCATCCCCTCATCATTTTCCAATTTAACCTCTTTGACCGATTTGATGGTAAGTGATATATCTAATGCAAGCTCTTCTTCACTGGAATTTATAAAGGATATGAAGTTGCTAAGCACCTTAGTACTAAGGAATAATAATATCTCTGATTCCATTCCATCAAATATTGGAGAATATGGAAGTTTGACTCAGCTGGATTTGAGTTTCAACAATCTAAGTGGACAACTTCCAGAATCACTCTTCAATTTGAGTCAACTCTCTCTCTTGTTCCTTGGAAATAATCAGTTAACTGGTACTCTACCTTCACTGAAAAGTACATCTCTTCTCAATATTGACTTGTCATACAATGGACTATCAGGGAGCTTTCCTTCTTGGGTTGATGAAGAGAATTTACAACTTAATTTGGTTGCCAACAACTTCACACTAGACAGTTCAAACAGCAGTGTTCTTCCTTCAGGATTGAACTGCCTTCAACAAAATTTTCCTTGCAATAAAGGTTCCGGAATTTATTACAACTTCGCAATCAAGTGTGGTGGTCCTCAGATTACTTCTTCTGATCAGATTGTGTTTGAGAGGGACAATGAAACTCTTGGTCCAGCTACATACTATGTGACTGACACAAACAGGTGGGCAGTTAGTAATGTTGGATTGTTTTCTGGAAGCAACAATCCTCAGTACACAAGCAGGTCTTCATCTCAATTCACAAATACTTTAGACTCAGAGCTGTTCCAAACAGCAAGGATCTCTGCTGGATCGCTAAGATACTATGGTTTAGGCCTTGAGAATGGAAACTATAATTTGACCCTCCAATTTGCCGAGACAGCAATTGTTAATTCAAATTCTTGGAAGAGTCTTGGAAGGCGTGTCTTCGATATTTATATCCAGGGAGATTTGGTTTTAAAAGATTTTGACATAAGAAAGGAGGCAGGAGGGGTCTCTTTCCAAGCTGTTAAGAAAGAATTCACGGCTCAAGTATTGGAAAATTACATTGAAATCCATCTCTTTTGGGCTGGAAAAAGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAATTTTGAGCCTACTGTGCCTAACACTGCTCCAAATGGGAAGAAGAATTGGACTGGTTTGATAGTGGGAATTGCTGTTGCCCTTGGACTTGTGTGCTTTCTAGCTGTTTTCTCTGTTTATTATTTCGTTCTAAGAAGAAAAAAGCCATATGAAAACCAAGACGAAGAGCTCCTAGGTATGGATGCTAGGCCATACACTTTCAGTTATGCTGAACTAAAAAATGCCACTGGAGACTTCAGTCCTTCTAATAAGCTTGGAGAGGGTGGATTTGGACCTGTCTATAAGGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCACACCAAGGAAAGAATCAGTTTGTAACAGAGATTGCAACCATATCAGCTGTGCAACATCGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGGAGAGGGAAATTTGGACCTTGTTTGGCCAACCCGTTATGATATATGCTTGGGTGTAGCCAGGGGTCTAGCCTATCTTCATGAGGAATCGCGACTTCGCATTGTACACAGAGATGTGAAGGCCAGCAATATTCTGCTTGACTATTATCTCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATTGGGTATCTTGCACCGGAGTATGCCATGCGTGGTCACCTCACAGAAAAGGCCGATGTGTTTGGTTTTGGTGTTGTAGCTCTAGAGATTGTCAGTGGAAGGCCAAATTCTGATACAAGCTTGGAAGAAGAAAAGACTTATCTTCTTGAATGGGCTTGGCAGCTACATGAAACCAACCGTGAAATTGAACTGGTAGACTCAAGATTATCAGAATTCAGTGAAGAAGAAGCAAGAAGAATGATAGGAGTCGCTCTTCTGTGCACTCAGACATCACCGACACTACGCCCACCAATGTCCCGTGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGTCCAGAGTTACAACAAAGCCCGGATACTTAACAGATTGGAAGTTCAATGATGTATCCAGCTTTATGAGTGAAAATAGCGATTTGAATTCACCAAGTATCAGCATGGAAGTTGATAGAGACTCTTCTCCATTAACTGTCAATAAAACTGAACTCCATGAGATTATTGGAGAGGGCAGGTGA 3096 41.54 MKLVPGAQSVRCIFVALCSVYVIGLFHIAVAQTTEANATTDPSEVRVLNSIFQQWGISASNQWNTSGEPCTGAAIDSTSIDSSDYNPGIKCDCSYDNASTCHITQLKVYALDVVGVIPDELWNLTFLTNLNLGQNYLTGPLSASIGNLTSMQYLSMGINALSGELPKELGQLTDLRSLAFGTNNFSGSLPSEIGNLVKLEQLYFDSSGVSGEIPSTFANLQSLTTVWASDNELTGNIPDFIGNWSKLTVLRLQGNSFEGAIPSSFSNLTSLTDLMVSDISNASSSSLEFIKDMKLLSTLVLRNNNISDSIPSNIGEYGSLTQLDLSFNNLSGQLPESLFNLSQLSLLFLGNNQLTGTLPSLKSTSLLNIDLSYNGLSGSFPSWVDEENLQLNLVANNFTLDSSNSSVLPSGLNCLQQNFPCNKGSGIYYNFAIKCGGPQITSSDQIVFERDNETLGPATYYVTDTNRWAVSNVGLFSGSNNPQYTSRSSSQFTNTLDSELFQTARISAGSLRYYGLGLENGNYNLTLQFAETAIVNSNSWKSLGRRVFDIYIQGDLVLKDFDIRKEAGGVSFQAVKKEFTAQVLENYIEIHLFWAGKRTCCVPAQGTYGPSISAISATPNFEPTVPNTAPNGKKNWTGLIVGIAVALGLVCFLAVFSVYYFVLRRKKPYENQDEELLGMDARPYTFSYAELKNATGDFSPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVSSHQGKNQFVTEIATISAVQHRNLVKLYGCCIEGVNRSLVYEYLENKSLDQALFGEGNLDLVWPTRYDICLGVARGLAYLHEESRLRIVHRDVKASNILLDYYLNPKISDFGLAKLYDDTKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDTSLEEEKTYLLEWAWQLHETNREIELVDSRLSEFSEEEARRMIGVALLCTQTSPTLRPPMSRVVAMLSGDIEVSRVTTKPGYLTDWKFNDVSSFMSENSDLNSPSISMEVDRDSSPLTVNKTELHEIIGEGR* 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13624910 13636163 - Vvi12g817 Vvi12g817 773340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g817 1031 Gene3D Ribonuclease Inhibitor 42 282 IPR032675 -
Vvi12g817 1031 SUPERFAMILY L domain-like 97 405 - -
Vvi12g817 1031 SUPERFAMILY Protein kinase-like (PK-like) 681 966 IPR011009 -
Vvi12g817 1031 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vvi12g817 1031 Gene3D Phosphorylase Kinase; domain 1 661 773 - -
Vvi12g817 1031 Pfam Malectin domain 430 615 IPR021720 -
Vvi12g817 1031 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 104 1018 - -
Vvi12g817 1031 ProSiteProfiles Protein kinase domain profile. 698 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g817 1031 SMART serkin_6 698 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g817 1031 Gene3D - 429 619 - -
Vvi12g817 1031 Pfam Protein kinase domain 701 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g817 1031 Gene3D Ribonuclease Inhibitor 283 406 IPR032675 -
Vvi12g817 1031 PANTHER BNAC03G71060D PROTEIN 104 1018 - -
Vvi12g817 1031 CDD STKc_IRAK 704 966 - -
Vvi12g817 1031 Coils Coil 916 936 - -
Vvi12g817 1031 Gene3D Transferase(Phosphotransferase) domain 1 774 978 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76134 PF00069 Pkinase 2.20E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g817 - - vvi:100262365 2017.66