Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g818 ATGATAGGTTTGGATATTTTTGATTGGGCTATTTCAATCGGGACACAAAAGAAGAAGATTAAGGACCGATCCCCTCAAATAGTTCATTGGGCTTTTATATCCAATGAATGTGCTCGTGGCTTAATTTTTAGATTGATGAGGAAACGCCCACAATGCGTGCGGTCGGTCACAAAGAGTCAAAAGACAACAACAGAAGAAAAACGAGAAAGAACAACAATGGACAGCGTCAGCTGGGTCTTTGTTGCCTTGTATGGTGTTTATGTGATTGGGCTCTTTCATGCAGCTGCTGCTCAATCCACTGAAGCCAATGCTACCACTGATCCATCTGAAGTGACAATTTTGAATTCTATATTTCAACAATGGGGAATCTCAGCATCAAACGAATGGAACACAAGTGGGGAACCATGCACCGGAGCTGCTCTTGATAGCGCTGACATTAAAAATCCCGGAATCAAATGTGATTGTTCCTACGACAATGCCTCTACTTGCCATATCACTCAACTGAAAGTTTATGCATTGGACGTCGTTGGTGCAATCCCAGATGAGCTATGGAATTTGACTTTCCTCACCAATCTGAATTTGGGTCAAAATTATTTGACAGGTTCCCTGTCTGCATCCATTGGCAATCTAACAAGCATGCAGTACTTGAGCCTGGGAATTAATGCACTATCAGGGGAGCTTCCTAAGGAACTTGGACAGCTTACTGATTTACGATCAATTGCCTTTGGGACAAACAACTTCTCTGGTTCTCTGCCATCTGAGCTTGGGAATTTGGTGAAGTTAGAACAACTGATATGTTGTTATTGTTTAACCAATCAATGTTACTTTGATAGCTCTGGTTTAAGTGGTGATATTCCTTCAACATTTGCTAATCTACAGAGCCTGACTACAGTGTGGGCGTCGGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTAACTGTCTTGAGGCTTCAGGGGAACTCTTTTGAAGGTTCCATCCCGTCATCATTTTCCAATTTAACCTCTTTGACCGATTTGAGAATAAGTGATATATCTAACGGAAGCTCTTCTTCACTGGAATTTATAAAGGACATGAAGTCGCTAAGCACCTTAATAATAAGGAATAATAATATCTCTGATGCCATTCCATCAAATATTGGAGAATATGGAAGTTTGACTCAGCTGGATTTGAGTTTCAACAATCTAAGTGGACAACTTCCAGAATCTCTCTTCAATTTGAGTCAACTCACTTACTTGTTCCTTGGAAATAATCAGTTGACTGGTAGTCTACCTTCACAGAAAAGTACATCTCTTCTCAATATTGACTTGTCATACAATGGACTATCAGGGAGCTTTCCTTCTTGGGTTGATGAAGAGAATTTACAACTTAATTTGGTCGCCAACAACTTCACACTAGACAGTTCAAACAGCAGTGTTCTTCCTTCAGGATTGAACTGCCTTCAACAAAATTTTCCTTGCAATAGAGGTTCTGGAATTTATTACAACTTTGCAATCAAGTGTGGTGGTCCTCAGATTACATCTTCTGATCAGATTGTGTTTGAGAGGGATAATGAAACTCTTGGTCCAGCTACATACTATGTGACTGACGAAAACAGGTGGGCAGTTAGCAATGTTGGATTGTTTTCCGGAAGCAACAATCCTCAGTACACAAGCACGTCTTCATCTCAATTCACAAATACTTTAGACTCAGAGCTGTTCCAAACAGCAAGGATCTCTGCTGGATCATTAAGATACTATGGCTTAGGCCTTGAGAATGGAAACTATACTTTGACCCTCCAATTTGCAGAGACAGCAATTGTTAATTCAAATTCTTGGAAGAGTCTTGGAAGGCGTGTCTTTGATGTTTATATCCAGGGAGATTTGGTTTTAAAAGATTTTGACATAAGAAAGGAGGCAGGAGGGGTCTCTTTCCAAGCTGTTAAGAAAGAATTCACGGCTCAAGTATTGGAAAATTACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAGATTTTGAACCTACCGTGAGTAACACTGCTCCAAATGGGAAGAAGAATAGGACTGGCTTGATAGTGGGAATTGCTGTTGGCCTTGGAGTTGTGTGCTTTCTATCTGTTTTCGCTCTTTATTATTTCGTTCTAAGAAGAAAAAAGCCATCAGAAAACCAAGATGAAGAGCTCCTAGGTATGGATGCTAGGCCATACACTTTCAGTTATGCTGAACTAAAAAATGCCACTGGAGACTTCAGTCCTTCTAATAAGCTTGGAGAGGGCGGATTTGGACCTGTCTATAAGGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTAGCATCCCACCAAGGAAAGAAGCAGTTTGTAGCAGAGATTGCAACCATATCAGCTGTGCAACATCGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGGTAAGGGAAACGGAAGTTTGGACCTTGATTGGCCAACCCGTTATGATATATGCTTGGGTGTAGCCAGGGGTCTAGCCTATCTTCATGAGGAATCGCGAGTTCGCATTGTACACAGAGATGTGAAGGCCAGCAATATTCTGCTTGACTATCATCGCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATTGGGTATCTTGCACCGGAGTATGCCATGCGTGGGCACCTCACAGAAAAGGCCGATGTGTTTGGTTTTGGTGTAGTAGCTCTAGAGATTGTCAGTGGAAGGCCAAATTCTGACACAAGTTTGGAAGAAGAAAAGACTTATCTTCTTGAATGGGCTTGGCAACTACATGAAAACAACCATGAAATTGAACTGGTAGACTCAAGGTTATCAGAATTCAGTGAAGAAGAAGCAAGAAGAATGATAGGAGTCGCTCTTCTGTGCACTCAGACATCACCAACACTACGGCCACCAATGTCCCGTGCGGTGGCAATGCTTTCAGGAGATATTGAAGTGTCCAGAGTTACAACAAAGCCCGGATACTTAACAGATTGGAAGTTCAACGATGCATCCAGCTTTATGAGTGAAAATAGCCATTTCAACTCATCAACAAGTATCAGCATGGCAGCTGATGCAGACCTGGCCAAAAATGCACCTTATATTCAGTTTATAGGAGTCATGAAGGTGAACTTTGCACTGTGGCTTTTTGAGTTGCTATCAAGACATTGTATGGCTTTTAGTGCCCTGGTTAACTTGGTGAAAAAATATCAATGGGAGATCAGGCTGGGACAAACCAGAAATGAGCTAGTTAAGCTGAATGTATCTTTTGGATATGTGATTGGAATTCAATCAGTCAGCTGCGTCTTTGTTGCCTTGTGTAGTGTCTATGTGACTGGGCTTTTTCACATAGCTGCTGCTCAAACCACTGAAGCCAATGCTACCACTGATCCGTCTGAAGTGAGAGTTTTGAATTCTATATTTCGACAATGGGGAATCTCAGCATCGAGCCAATGGAGAACAATTGGGGAACCATGCACCGGCGCTGCCATTGACTCGACCAGCATTGATAGCGCTGACTATAATTTTGGAATCAAATGTGATTGTTCCTACGACAATGCCTCTACTTGCCATATCACTCAACTGAAAGTTTATGCATTGGACGTTGTTGGTGTAATCCCAGATGAGCTATGGAATTTGACTTTCCTCACCAGTCTGAATTTGGGTCAAAATTATTTGACAGGTCCCCTGTCTGCATCCATTGGCAATCTAACAAGCATGCAGTACTTGAGCCTGGGAATTAATGCACTATCAGGGGAGCTTCCTAAGGAACTTGGACAGCTTACTGATTTACGATCATTTGCTTTTGGGACAAACAACTTCTCTGGTTCCCTGCCGTCTGAGATTGGGAATTTGGTGAAGTTAGAGCAACTTTACTTTGATAGCTCTGGGGTAAGTGGTGAGATTCCTTCAACATTTGCTAATCTACAGAGCCTGACTATAGTGTGGGCGTCAGATAATGAACTCACAGGAAACATACCTGATTTCATTGGGAATTGGTCAAAGCTCACTGTCTTGAGGCTTCAGGGGAACTCTTTTGAAGGTCCCATCCCCTCATCATTTTCCAATTTAACCTCTTTGACCGATTTGAGAGTAAGTGATATATCTAATGCGAGCTCTTCTTCACTGGAATTTATAAAGAATATGAAGTTGCTAAGCACCTTAGTACTAAGGAATAATAATATCTCTGATTCTATTCCATCAAATATTGGAGAATATGGAAGTTTGACTCAGCTGGATTTGAGTTTCAACAATCTAAGTGGACAACTTCCAGAATCTCTCTTCAATTTGAGTCAACTCACTTACTTGTTCCTGGGAAATAATCAGTTAACTGGTACTCTACCTTCACTGAAAAGTACATCTCTTCTCAATATTGACTTGTCATACAATGGACTATCAGGGAGCTTTCCTTCTTGGGTTGATGAAGAGAATTTACAACTTAATTTGGTCGCCAACAACTTCACACTAGACAGTTCAAACAGCAGTGTTCTTCCTTCAGGATTGAACTGCCTTCAACAAAATTTTCCTTGCAATAGAGGTTCCGGAATTTATTACAACTTCGCAATCAAGTGTGGTGGTCCTCAGATTACATCTTCTGATCAGATCGTGTTTGAGAGGGATAGTGAAACTCTTGGTCCAGCTACATACTATGTGACTGACACAAACAGGTGGGCATTTAGCAATGTTGGAAAGTTTTCCGGAAGCAACAATTACACAAGCACGTCCTCATCTCTATTCACAAATACTTTAGACTCAGAGCTGTTCCAAACAGCAAGGATCTCTGCTGGATCGTTAAGATACTATGGCTTAGGCCTTAAGAATGGAAACTATACTTTGACCCTCCAATTTGCAGAGACAGCAATTGTTAATTCAAATTCTTGGAAGACTCTTGGAAGGCGTGTCTTCGATATTTATATCCAGGGAGATTTAATTTTAAAAGATTTTGACATAAGAAAGGAGGCAGGGGGGGTCTCTTTCCAAGCTGTTAAGAAAGAATTCACAGCTCAGGTATTGGAAAATTACATTGAAATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGTGTACCTGCTCAAGGGACATATGGACCTTCTATTTCAGCAATCAGTGCTACCCCAAATTTTGAGCCTACTGTGCCTAACACTGCTCCAAATGGGAAGAAGCATAGGACTGGTTTGATAGTTGGAATTGCTGTTGCCCTTGGACTTGTGTGCTTTCTAGCTGTTTTCTCTGTTTATTATTTCGTTCTAAGAAGAAAAAAGCCATATGAAAACCAAGACGAAGAGCTCCTAGGTATGGAGGCTAGGCCATACACTTTTAGTTATGCTGAACTAAAAAATGCCACTGGAGACTTCAGTCCTTCTAATAAGCTTGGAGAGGGTGGATTTGGACCTGTCTATAAGGGGACACTTTCTGATGGAAGAGTTGTTGCTGTAAAGCAACTATCTGTATCATCGCACCAAGGAAAGAATCAGTTTGTAACAGAGATTAAAACCATATCAGCTGTGCAGCATCGTAACCTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGAAAACAAGAGCCTTGATCAAGCACTATTTGGAGAGGGAAATTTGGACCTTGTTTGGCAAACCCGTTATGATATATGCTTGGGTGTAGCCAGGGGTCTAGCCTATCTTCATGAGGAATCGCGACTTCGCATTGTACACAGAGATGTGAAGGCCAGCAATATTCTGCTTGACTATTATCTCAACCCTAAGATTTCAGATTTTGGTTTGGCCAAACTGTATGATGACACGAAGACTCACATAAGCACCCGTGTTGCAGGCACAATTGGGTATCTTGCACCAGAGTATGCCATGCGTGGTCACCTCACAGAAAAGGCCGATGTGTTTGGTTTTGGTGTTGTAGCTCTAGAGATTGTCAGTGGAAGGCCAAATTCTGATACAAGCTTGGAAGAAGAAAAGACTTATCTTCTTGAATGGCATACATACAGATTGTGGAAATTGGATCTTTCCATTTTGGCTTGGCAGCTACATGAAACCAACTGTGAACTTGAACTGGTAGACTCAGGATTATCAGAATTTAGTGAAGAAGAAGCAACAAGAATGATAGGAGTCGCTCTTCTGTGCACTCAGACATCACCGACACTACGCCCACCAATGTCCCATGTGGTGGCAATGCTTTCAGGAGATATTGAAGTGTCCAGAGTTACAACAAAGCCCGGATACTTAACGGATTGGAAGTTCAATGATGCATCCAGCTTTATGAGTGAAAATAGTGATTTGAGTTCACCAAGTATCAGCATGGCAGTTGATACAGACTGTTCTGCATTAACTGTCAATAAAACTGAATCCATGAGATTATTGGAGAGGGCAGGTGAAGAATAG 6582 41.58 MIGLDIFDWAISIGTQKKKIKDRSPQIVHWAFISNECARGLIFRLMRKRPQCVRSVTKSQKTTTEEKRERTTMDSVSWVFVALYGVYVIGLFHAAAAQSTEANATTDPSEVTILNSIFQQWGISASNEWNTSGEPCTGAALDSADIKNPGIKCDCSYDNASTCHITQLKVYALDVVGAIPDELWNLTFLTNLNLGQNYLTGSLSASIGNLTSMQYLSLGINALSGELPKELGQLTDLRSIAFGTNNFSGSLPSELGNLVKLEQLICCYCLTNQCYFDSSGLSGDIPSTFANLQSLTTVWASDNELTGNIPDFIGNWSKLTVLRLQGNSFEGSIPSSFSNLTSLTDLRISDISNGSSSSLEFIKDMKSLSTLIIRNNNISDAIPSNIGEYGSLTQLDLSFNNLSGQLPESLFNLSQLTYLFLGNNQLTGSLPSQKSTSLLNIDLSYNGLSGSFPSWVDEENLQLNLVANNFTLDSSNSSVLPSGLNCLQQNFPCNRGSGIYYNFAIKCGGPQITSSDQIVFERDNETLGPATYYVTDENRWAVSNVGLFSGSNNPQYTSTSSSQFTNTLDSELFQTARISAGSLRYYGLGLENGNYTLTLQFAETAIVNSNSWKSLGRRVFDVYIQGDLVLKDFDIRKEAGGVSFQAVKKEFTAQVLENYIEIHLFWAGKGTCCVPAQGTYGPSISAISATPDFEPTVSNTAPNGKKNRTGLIVGIAVGLGVVCFLSVFALYYFVLRRKKPSENQDEELLGMDARPYTFSYAELKNATGDFSPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVASHQGKKQFVAEIATISAVQHRNLVKLYGCCIEGVNRSLVYEYLENKSLDQALFGKGNGSLDLDWPTRYDICLGVARGLAYLHEESRVRIVHRDVKASNILLDYHRNPKISDFGLAKLYDDTKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDTSLEEEKTYLLEWAWQLHENNHEIELVDSRLSEFSEEEARRMIGVALLCTQTSPTLRPPMSRAVAMLSGDIEVSRVTTKPGYLTDWKFNDASSFMSENSHFNSSTSISMAADADLAKNAPYIQFIGVMKVNFALWLFELLSRHCMAFSALVNLVKKYQWEIRLGQTRNELVKLNVSFGYVIGIQSVSCVFVALCSVYVTGLFHIAAAQTTEANATTDPSEVRVLNSIFRQWGISASSQWRTIGEPCTGAAIDSTSIDSADYNFGIKCDCSYDNASTCHITQLKVYALDVVGVIPDELWNLTFLTSLNLGQNYLTGPLSASIGNLTSMQYLSLGINALSGELPKELGQLTDLRSFAFGTNNFSGSLPSEIGNLVKLEQLYFDSSGVSGEIPSTFANLQSLTIVWASDNELTGNIPDFIGNWSKLTVLRLQGNSFEGPIPSSFSNLTSLTDLRVSDISNASSSSLEFIKNMKLLSTLVLRNNNISDSIPSNIGEYGSLTQLDLSFNNLSGQLPESLFNLSQLTYLFLGNNQLTGTLPSLKSTSLLNIDLSYNGLSGSFPSWVDEENLQLNLVANNFTLDSSNSSVLPSGLNCLQQNFPCNRGSGIYYNFAIKCGGPQITSSDQIVFERDSETLGPATYYVTDTNRWAFSNVGKFSGSNNYTSTSSSLFTNTLDSELFQTARISAGSLRYYGLGLKNGNYTLTLQFAETAIVNSNSWKTLGRRVFDIYIQGDLILKDFDIRKEAGGVSFQAVKKEFTAQVLENYIEIHLFWAGKGTCCVPAQGTYGPSISAISATPNFEPTVPNTAPNGKKHRTGLIVGIAVALGLVCFLAVFSVYYFVLRRKKPYENQDEELLGMEARPYTFSYAELKNATGDFSPSNKLGEGGFGPVYKGTLSDGRVVAVKQLSVSSHQGKNQFVTEIKTISAVQHRNLVKLYGCCIEGVNRSLVYEYLENKSLDQALFGEGNLDLVWQTRYDICLGVARGLAYLHEESRLRIVHRDVKASNILLDYYLNPKISDFGLAKLYDDTKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFGFGVVALEIVSGRPNSDTSLEEEKTYLLEWHTYRLWKLDLSILAWQLHETNCELELVDSGLSEFSEEEATRMIGVALLCTQTSPTLRPPMSHVVAMLSGDIEVSRVTTKPGYLTDWKFNDASSFMSENSDLSSPSISMAVDTDCSALTVNKTESMRLLERAGEE* 2194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13721466 13758979 - Vvi12g818 Vvi12g818 773341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g818 2193 ProSiteProfiles Protein kinase domain profile. 770 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g818 2193 Gene3D Ribonuclease Inhibitor 111 274 IPR032675 -
Vvi12g818 2193 SUPERFAMILY Protein kinase-like (PK-like) 753 1040 IPR011009 -
Vvi12g818 2193 Pfam Protein kinase domain 1848 2052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g818 2193 Pfam Protein kinase domain 773 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g818 2193 SMART LRR_typ_2 1297 1321 IPR003591 -
Vvi12g818 2193 SMART LRR_typ_2 365 389 IPR003591 -
Vvi12g818 2193 SMART LRR_typ_2 390 413 IPR003591 -
Vvi12g818 2193 SMART LRR_typ_2 210 234 IPR003591 -
Vvi12g818 2193 SMART LRR_typ_2 1467 1490 IPR003591 -
Vvi12g818 2193 SMART LRR_typ_2 1442 1466 IPR003591 -
Vvi12g818 2193 Pfam Malectin domain 502 687 IPR021720 -
Vvi12g818 2193 Pfam Malectin domain 1579 1762 IPR021720 -
Vvi12g818 2193 Gene3D Ribonuclease Inhibitor 1412 1570 IPR032675 -
Vvi12g818 2193 SUPERFAMILY Protein kinase-like (PK-like) 1829 2154 IPR011009 -
Vvi12g818 2193 ProSiteProfiles Protein kinase domain profile. 1845 2132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g818 2193 PANTHER BNAC03G71060D PROTEIN 1254 2180 - -
Vvi12g818 2193 PANTHER BNAC03G71060D PROTEIN 177 1087 - -
Vvi12g818 2193 Gene3D - 501 691 - -
Vvi12g818 2193 Gene3D - 1578 1766 - -
Vvi12g818 2193 SMART serkin_6 770 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g818 2193 SMART serkin_6 1845 2126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi12g818 2193 CDD STKc_IRAK 776 1040 - -
Vvi12g818 2193 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1254 2180 - -
Vvi12g818 2193 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 177 1087 - -
Vvi12g818 2193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Vvi12g818 2193 Pfam Leucine rich repeat 367 426 IPR001611 GO:0005515
Vvi12g818 2193 SUPERFAMILY L domain-like 157 473 - -
Vvi12g818 2193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1965 1977 IPR008271 GO:0004672|GO:0006468
Vvi12g818 2193 Gene3D Transferase(Phosphotransferase) domain 1 1921 2138 - -
Vvi12g818 2193 Gene3D Transferase(Phosphotransferase) domain 1 846 1052 - -
Vvi12g818 2193 SMART LRR_bac_2 1466 1486 - -
Vvi12g818 2193 SMART LRR_bac_2 389 409 - -
Vvi12g818 2193 SMART LRR_bac_2 413 433 - -
Vvi12g818 2193 SMART LRR_bac_2 1490 1510 - -
Vvi12g818 2193 SMART LRR_bac_2 292 312 - -
Vvi12g818 2193 SMART LRR_bac_2 1369 1389 - -
Vvi12g818 2193 Gene3D Phosphorylase Kinase; domain 1 1808 1920 - -
Vvi12g818 2193 Gene3D Phosphorylase Kinase; domain 1 733 845 - -
Vvi12g818 2193 Gene3D Ribonuclease Inhibitor 275 355 IPR032675 -
Vvi12g818 2193 Gene3D Ribonuclease Inhibitor 356 478 IPR032675 -
Vvi12g818 2193 SUPERFAMILY L domain-like 1247 1554 - -
Vvi12g818 2193 CDD STKc_IRAK 1851 2126 - -
Vvi12g818 2193 Gene3D Ribonuclease Inhibitor 1240 1411 IPR032675 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76135 PF00069 Pkinase 3.30E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g818 - - cpep:111811393 2632.44