Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi12g852 ATGTCTTCATCACGTCGCCATTCGGAGGACTTGCCATACGTTCACAAGGTGGGCGTGCCTCCTAAGCAGGACCTTTTGAAGGAGTTCACAGACACTGTGAAAGAAACTTTCTTTGCAGATGACCCCTTAAGACCTTTTAAAGACCAGCCAAGATCGAGACAATTTGTACTTGGTCTTCAATCCCTTTTCCCAATTCTGGAATGGGGAAGGGATTACAACCTTACCAAACTTAGAGGTGATCTCATTGCTGGATTCACCATTGCAAGCCTCTGTATTCCTCAGGATATTGGATATGCAAAGCTTGCAAATCTTGCTCCTCAATATGGTTTATACAGTAGCTTTGTTCCACCACTTATCTATGCCTTCATGGGTAGCTCAAGAGACATTGCCATAGGACCAGTAGCTGTGGTGTCTCTCCTGATTGGAACTATGTTGCAGGATGTGATTGATCCAACTGAAAATGAAGTTGAGTATAGGCGGCTTGCATTCACTGCTACATTCTTTGCGGGCATCACTCAGGCCACACTAGGTTTCTTTAGATTGGGTTTCTTGATTGACTTCTTATCTCATGCTGCTATTGTCGGGTTTATGGCTGGAGCTGCCATTACCATTGCCCTTCAACAACTTAAAGGCTTGCTGGGCATAAAGAAGTTCACAAGGAAAACCGATATTATCTCTGTTATGCACTCAGTATGGAGCACAGTACATCATGGGTGGAACTGGGAGACCATAGTCATAGGATTATCATTCTTGGCTTTCCTTTTGTTGGCCAAGTATATTGGCAAGAAGAACAAGAAATTATTTTGGGTGCCTGCAATTGCTCCCTTGATCTCTGTCATACTTTCAACCTTTTTTGTGTATATCACTCATGCTGAAAAACATGGTGTTCAAATTGTCCCACATATTAGAAAAGGTGTCAATCCACCATCTCTTCATGAAATATATTTCACAGGAGGGTATGTCATTAAAGGCTTTAAGATCGGTGTTGTGGTCGGTTTGATAGCTCTAACGGAAGCTATAGCAATTGGAAGAACATTTGCAGCCATGAAGGGGTATCAGCTGGATGGAAACAAAGAAATGGTAGCATTAGGAACTATGAATATTGTGGGCTCAATGACATCTTGTTATGTTGCTACAGGATCCTTTTCTCGGTCAGCAGTGAATAACATGGCTGGCTGCCGCACAGCAGTTTCCAACATAGTGATGTCCTGCATTGTATTGCTAACTTTGGAAGTTATCACACCATTATTTAAGTACACCCCGAATGCCATACTCTCTTCTATCATCATATCTGCTGTGCTAAGCCTAATTGACATTCAAGCAATAGTTCTGATATGGAAGATCGATAAATTTGACTTTGTTGCTTGCATGGGAGCCCTTTTTGGTGTGGTTTTTGCTTCTGTTGAGATAGGGCTCTTAATTGCAATCTCCATATCCTTTATCAAAATCCTCCTGCAAGTGACTAGGCCCAGGACCACAATACTTGGGAAGCTCCCAAGGACAAATATTTACCGAAACATATATCAATATCCTGAAGCAGCAAAGGTGCCAGGCATTTTAATTGTCAGAGTTGACTCTGCAATTTACTTCTCCAACTCCAACTATGTTAAGGAGAGGATTTTGAGATGGCTAACTGATGAGGAGGAGCAACTGAAAGAAAACCAGCTACCAAGAATCCAATCTTTGATAGTCGAAATGTCACCTGTTACAGAAATTGACACTAGTGGCATCCATGCCCTAGAAGAGTTATATAAGAACTTGCAGAAGAGAGAAGTTCAGCTTAATCTGGCAAATCCTGGGCAAGTTGTGATTGACAAGCTCCATGCATCCAATTTTGCAAACTTGATTGGGCAGGACAAGATCTTTCTCAGTGTTGCAGACGCAGTTCTATCTTATGCTCCAAAGATGGAAGACCTTTAA 1920 41.98 MSSSRRHSEDLPYVHKVGVPPKQDLLKEFTDTVKETFFADDPLRPFKDQPRSRQFVLGLQSLFPILEWGRDYNLTKLRGDLIAGFTIASLCIPQDIGYAKLANLAPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLIGTMLQDVIDPTENEVEYRRLAFTATFFAGITQATLGFFRLGFLIDFLSHAAIVGFMAGAAITIALQQLKGLLGIKKFTRKTDIISVMHSVWSTVHHGWNWETIVIGLSFLAFLLLAKYIGKKNKKLFWVPAIAPLISVILSTFFVYITHAEKHGVQIVPHIRKGVNPPSLHEIYFTGGYVIKGFKIGVVVGLIALTEAIAIGRTFAAMKGYQLDGNKEMVALGTMNIVGSMTSCYVATGSFSRSAVNNMAGCRTAVSNIVMSCIVLLTLEVITPLFKYTPNAILSSIIISAVLSLIDIQAIVLIWKIDKFDFVACMGALFGVVFASVEIGLLIAISISFIKILLQVTRPRTTILGKLPRTNIYRNIYQYPEAAKVPGILIVRVDSAIYFSNSNYVKERILRWLTDEEEQLKENQLPRIQSLIVEMSPVTEIDTSGIHALEELYKNLQKREVQLNLANPGQVVIDKLHASNFANLIGQDKIFLSVADAVLSYAPKMEDL* 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14416562 14419921 + Vvi12g852 Vvi12g852 773375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi12g852 639 Gene3D STAS domain 489 635 IPR036513 -
Vvi12g852 639 Pfam Sulfate permease family 77 457 IPR011547 GO:0016021
Vvi12g852 639 ProSitePatterns SLC26A transporters signature. 106 127 IPR018045 GO:0008271|GO:0008272
Vvi12g852 639 Pfam STAS domain 510 628 IPR002645 -
Vvi12g852 639 PANTHER SULFATE TRANSPORTER 1 637 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vvi12g852 639 Coils Coil 577 597 - -
Vvi12g852 639 SUPERFAMILY SpoIIaa-like 511 629 IPR036513 -
Vvi12g852 639 ProSiteProfiles STAS domain profile. 509 632 IPR002645 -
Vvi12g852 639 PANTHER SULFATE TRANSPORTER 1.2-LIKE 1 637 - -
Vvi12g852 639 TIGRFAM sulP: sulfate permease 64 628 IPR001902 GO:0015301|GO:0016020|GO:0055085
Vvi12g852 639 CDD STAS_SulP_like_sulfate_transporter 510 625 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi12g852 K17470 - vvi:100260708 1218.37